Equivalence class NR_all_03510.14 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1795 | 2014-07-09 |
| 2 | 4U4R|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1795 | 2014-10-22 |
| 3 | 4U50|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 4 | 4U4Q|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 5 | 4U3U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1795 | 2014-10-22 |
| 6 | 5LYB|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1795 | 2016-11-23 |
| 7 | 4U52|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 8 | 4U4U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 9 | 4V88|1|A2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1781 | 2014-07-09 |
| 10 | 4V8Z|1|B2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 6.6 | 1781 | 2014-07-09 |
| 11 | 4V8Y|1|B2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 4.3 | 1781 | 2014-07-09 |
| 12 | 4U4R|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1750 | 2014-10-22 |
| 13 | 5FCJ|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 1795 | 2016-05-11 |
| 14 | 5I4L|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2016-06-22 |
| 15 | 4U3U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1750 | 2014-10-22 |
| 16 | 5FCI|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 1795 | 2016-05-11 |
| 17 | 5DC3|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1795 | 2016-06-01 |
| 18 | 4U3N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 19 | 4U6F|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 20 | 4U4N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 21 | 4U55|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 22 | 5DAT|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1795 | 2016-08-31 |
| 23 | 4U4Y|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 24 | 4U53|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1795 | 2014-10-22 |
| 25 | 4U4Q|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 26 | 4U4U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 27 | 4U4Z|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 28 | 4U4N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 29 | 4U52|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 30 | 4U3M|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 31 | 5MEI|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1783 | 2017-06-28 |
| 32 | 4U51|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 33 | 5DGV|1|6 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1795 | 2016-12-14 |
| 34 | 4U3M|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 35 | 4U55|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 36 | 4U51|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 37 | 4U4Z|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 38 | 5I4L|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2016-06-22 |
| 39 | 5TGA|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1795 | 2016-11-23 |
| 40 | 4U3N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 41 | 5DGV|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1781 | 2016-12-14 |
| 42 | 4U50|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 43 | 4U56|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1795 | 2014-10-22 |
| 44 | 5DGF|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1795 | 2016-12-14 |
| 45 | 4U4Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 46 | 5LYB|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1781 | 2016-11-23 |
| 47 | 4U53|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1750 | 2014-10-22 |
| 48 | 4U6F|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2014-10-22 |
| 49 | 5TGA|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1781 | 2016-11-23 |
| 50 | 5MEI|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1781 | 2017-06-28 |
| 51 | 5TZS|1|1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Architecture of the yeast small subunit processome | Electron microscopy | 5.1 | 515 | 2016-12-21 |
| 52 | 5TGM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1795 | 2017-01-18 |
| 53 | 5DGE|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1795 | 2017-01-25 |
| 54 | 5DC3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1781 | 2016-06-01 |
| 55 | 5FCJ|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 1781 | 2016-05-11 |
| 56 | 5DAT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1781 | 2016-08-31 |
| 57 | 5TGM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1781 | 2017-01-18 |
| 58 | 5FCI|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 1781 | 2016-05-11 |
| 59 | 5DGE|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1781 | 2017-01-25 |
| 60 | 4U56|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1750 | 2014-10-22 |
| 61 | 3J6Y|1|1S | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | Electron microscopy | 6.1 | 1781 | 2014-06-11 |
| 62 | 5JUU|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 63 | 5DGF|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1781 | 2016-12-14 |
| 64 | 4U4O|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 1791 | 2014-10-22 |
| 65 | 3J78|1|1S | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | Electron microscopy | 6.3 | 1781 | 2014-08-06 |
| 66 | 3J77|1|1S | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | Electron microscopy | 6.2 | 1781 | 2014-08-06 |
| 67 | 5M1J|1|22 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 1781 | 2017-01-18 |
| 68 | 3J6X|1|1S | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | Electron microscopy | 6.1 | 1781 | 2014-06-11 |
| 69 | 5JUP|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 1781 | 2016-10-05 |
| 70 | 5JUT|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 71 | 5MC6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 1767 | 2017-01-18 |
| 72 | 5LL6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | Electron microscopy | 3.9 | 1325 | 2017-04-12 |
| 73 | 5JUS|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | Electron microscopy | 4.2 | 1781 | 2016-10-05 |
| 74 | 4U4O|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 1750 | 2014-10-22 |
| 75 | 5JUO|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 1781 | 2016-10-05 |
| 76 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | Electron microscopy | 8.7 | 1734 | 2017-03-29 |
| 77 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | Electron microscopy | 4.5 | 1619 | 2017-03-29 |
| 78 | 4V7R|1|C1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 1789 | 2014-07-09 |
| 79 | 4V7R|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 1789 | 2014-07-09 |
| 80 | 4V6I|1|CA | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | Electron microscopy | 8.8 | 1721 | 2014-07-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_03510.14 | NR_all_03510.13 | 2.135 | (78) 3J6X|1|1S, 3J6Y|1|1S, 3J77|1|1S, 3J78|1|1S, 4U3M|1|2, 4U3M|1|6, 4U3N|1|2, 4U3N|1|6, 4U3U|1|2, 4U3U|1|6, 4U4N|1|2, 4U4N|1|6, 4U4O|1|2, 4U4O|1|6, 4U4Q|1|2, 4U4Q|1|6, 4U4R|1|2, 4U4R|1|6, 4U4U|1|2, 4U4U|1|6, 4U4Y|1|2, 4U4Y|1|6, 4U4Z|1|2, 4U4Z|1|6, 4U50|1|2, 4U50|1|6, 4U51|1|2, 4U51|1|6, 4U52|1|2, 4U52|1|6, 4U53|1|2, 4U53|1|6, 4U55|1|2, 4U55|1|6, 4U56|1|2, 4U56|1|6, 4U6F|1|2, 4U6F|1|6, 4V6I|1|CA, 4V7R|1|A1, 4V7R|1|C1, 4V88|1|A2, 4V88|1|A6, 4V8Y|1|B2, 4V8Z|1|B2, 5DAT|1|2, 5DAT|1|6, 5DC3|1|2, 5DC3|1|6, 5DGE|1|2, 5DGE|1|6, 5DGF|1|2, 5DGF|1|6, 5DGV|1|2, 5DGV|1|6, 5FCI|1|2, 5FCI|1|6, 5FCJ|1|2, 5FCJ|1|6, 5I4L|1|2, 5I4L|1|6, 5JUO|1|A, 5JUP|1|A, 5JUS|1|A, 5JUT|1|A, 5JUU|1|A, 5LL6|1|2, 5LYB|1|2, 5LYB|1|6, 5M1J|1|22, 5MC6|1|2, 5TGA|1|2, 5TGA|1|6, 5TGM|1|2, 5TGM|1|6, 5TZS|1|1, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A | (2) 5MEI|1|6, 5MEI|1|A | (0) |
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4V6I|1|CA | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 1721 | |
| 2 | 5MEI|1|6 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1783 | |
| 3 | 4U4O|1|6 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1791 | |
| 4 | 5DAT|1|6 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1795 | |
| 5 | 5DGF|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 6 | 5DC3|1|6 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 7 | 5DGE|1|6 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 8 | 5DGV|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 9 | 5TGM|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1795 | |
| 10 | 5LYB|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 11 | 5TGA|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 12 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 13 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 14 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 | |
| 15 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 | |
| 16 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 17 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 18 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 19 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 20 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 21 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 22 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 23 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 24 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 25 | 5I4L|1|6 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 26 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 27 | 5FCI|1|6 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 1795 | |
| 28 | 5FCJ|1|6 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 29 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 30 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 31 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1795 | |
| 32 | 4V7R|1|C1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 33 | 4V7R|1|A1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 34 | 4U4O|1|2 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1750 | |
| 35 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 36 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 | |
| 37 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 38 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 39 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 40 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 41 | 5DAT|1|2 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1781 | |
| 42 | 5DGF|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 43 | 5DGE|1|2 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1781 | |
| 44 | 5DC3|1|2 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 45 | 5DGV|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 46 | 5TGM|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 47 | 5FCJ|1|2 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 48 | 5FCI|1|2 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 1781 | |
| 49 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 | |
| 50 | 5MEI|1|A | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 51 | 5TGA|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 52 | 5LYB|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 53 | 4V8Z|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 1781 | |
| 54 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1781 | |
| 55 | 4V8Y|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 1781 | |
| 56 | 5I4L|1|2 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 57 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 58 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 59 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 60 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 61 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 | |
| 62 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 | |
| 63 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 64 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 65 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 66 | 5JUP|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 1781 | |
| 67 | 5JUS|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 4.2 | 1781 | |
| 68 | 5JUT|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 69 | 5JUO|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 70 | 3J6X|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 1781 | |
| 71 | 3J6Y|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 1781 | |
| 72 | 5JUU|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 73 | 3J78|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 1781 | |
| 74 | 3J77|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 1781 | |
| 75 | 5M1J|1|22 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 1781 | |
| 76 | 5MC6|1|2 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 1767 | |
| 77 | 5LL6|1|2 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | ELECTRON MICROSCOPY | 3.9 | 1325 | |
| 78 | 5TZS|1|1 | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 515 | |
| 79 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 1619 | |
| 80 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 1734 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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