RNA 3D Hub //

Equivalence class NR_all_05217.4 Obsolete

Showing 1 to 10 of 10 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13HOY|1|P (rep)5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3'Complete RNA polymerase II elongation complex VIX-ray diffraction3.4102009-07-28
25FLM|1|PRNA, DNA-RNA ELONGATION SCAFFOLDsynthetic constructStructure of transcribing mammalian RNA polymerase IIElectron microscopy3.4142016-01-20
38HIM|1|PRNA (5'-R(*UP*AP*UP*AP*UP*GP*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3')Brassica oleraceaA cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 AngstromElectron microscopy2.8112023-03-22
46EXV|1|PRNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3')synthetic constructStructure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitinElectron microscopy3.6142018-03-21
56HLR|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)Electron microscopy3.1892019-04-03
66HLQ|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.1892019-04-03
75M5X|1|RRNASaccharomyces cerevisiaeRNA Polymerase I elongation complex 1Electron microscopy4132016-12-21
86HKO|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.4292019-04-03
97AOE|1|RRNAsynthetic constructSchizosaccharomyces pombe RNA polymerase I (elongation complex)Electron microscopy3.972021-02-24
105M3F|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex at 3.8AElectron microscopy3.882016-11-23

Release history

Release3.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.291
Date2023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_05217.4NR_all_05217.33.275(9) 3HOY|1|P, 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P, 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R, 7AOE|1|R(1) 8HIM|1|P(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_05217.4NR_all_05217.53.292(10) 3HOY|1|P, 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P, 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R, 7AOE|1|R, 8HIM|1|P(0) (1) 8P4E|1|P

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 10 of 10 entries
#SViewPDBTitleMethodResolution#NTs
15M5X|1|RRNA Polymerase I elongation complex 1ELECTRON MICROSCOPY413
25M3F|1|RYeast RNA polymerase I elongation complex at 3.8AELECTRON MICROSCOPY3.88
37AOE|1|RSchizosaccharomyces pombe RNA polymerase I (elongation complex)ELECTRON MICROSCOPY3.97
45FLM|1|PStructure of transcribing mammalian RNA polymerase IIELECTRON MICROSCOPY3.414
56EXV|1|PStructure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitinELECTRON MICROSCOPY3.614
66HKO|1|RYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.429
76HLR|1|RYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)ELECTRON MICROSCOPY3.189
86HLQ|1|RYeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.189
98HIM|1|PA cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 AngstromELECTRON MICROSCOPY2.811
103HOY|1|PComplete RNA polymerase II elongation complex VIX-RAY DIFFRACTION3.410

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

5M5X|1|R:5M5X|1|R = 05M5X|1|R:5M3F|1|R = 0.21705M5X|1|R:7AOE|1|R = 0.25045M5X|1|R:5FLM|1|P = 0.61195M5X|1|R:6EXV|1|P = 0.58865M5X|1|R:6HKO|1|R = 0.32395M5X|1|R:6HLR|1|R = 0.29775M5X|1|R:6HLQ|1|R = 0.32815M5X|1|R:8HIM|1|P = 0.83625M5X|1|R:3HOY|1|P = 0.93945M3F|1|R:5M5X|1|R = 0.21705M3F|1|R:5M3F|1|R = 05M3F|1|R:7AOE|1|R = 0.17005M3F|1|R:5FLM|1|P = 0.29225M3F|1|R:6EXV|1|P = 0.29865M3F|1|R:6HKO|1|R = 0.29995M3F|1|R:6HLR|1|R = 0.24505M3F|1|R:6HLQ|1|R = 0.25215M3F|1|R:8HIM|1|P = 0.35015M3F|1|R:3HOY|1|P = 0.41137AOE|1|R:5M5X|1|R = 0.25047AOE|1|R:5M3F|1|R = 0.17007AOE|1|R:7AOE|1|R = 07AOE|1|R:5FLM|1|P = 0.28017AOE|1|R:6EXV|1|P = 0.32027AOE|1|R:6HKO|1|R = 0.28977AOE|1|R:6HLR|1|R = 0.23407AOE|1|R:6HLQ|1|R = 0.23197AOE|1|R:8HIM|1|P = 0.39077AOE|1|R:3HOY|1|P = 0.45945FLM|1|P:5M5X|1|R = 0.61195FLM|1|P:5M3F|1|R = 0.29225FLM|1|P:7AOE|1|R = 0.28015FLM|1|P:5FLM|1|P = 05FLM|1|P:6EXV|1|P = 0.29225FLM|1|P:6HKO|1|R = 0.23735FLM|1|P:6HLR|1|R = 0.23165FLM|1|P:6HLQ|1|R = 0.33585FLM|1|P:8HIM|1|P = 0.85635FLM|1|P:3HOY|1|P = 0.96836EXV|1|P:5M5X|1|R = 0.58866EXV|1|P:5M3F|1|R = 0.29866EXV|1|P:7AOE|1|R = 0.32026EXV|1|P:5FLM|1|P = 0.29226EXV|1|P:6EXV|1|P = 06EXV|1|P:6HKO|1|R = 0.21136EXV|1|P:6HLR|1|R = 0.20586EXV|1|P:6HLQ|1|R = 0.27836EXV|1|P:8HIM|1|P = 1.00976EXV|1|P:3HOY|1|P = 1.10966HKO|1|R:5M5X|1|R = 0.32396HKO|1|R:5M3F|1|R = 0.29996HKO|1|R:7AOE|1|R = 0.28976HKO|1|R:5FLM|1|P = 0.23736HKO|1|R:6EXV|1|P = 0.21136HKO|1|R:6HKO|1|R = 06HKO|1|R:6HLR|1|R = 0.11046HKO|1|R:6HLQ|1|R = 0.17576HKO|1|R:8HIM|1|P = 0.30586HKO|1|R:3HOY|1|P = 0.35046HLR|1|R:5M5X|1|R = 0.29776HLR|1|R:5M3F|1|R = 0.24506HLR|1|R:7AOE|1|R = 0.23406HLR|1|R:5FLM|1|P = 0.23166HLR|1|R:6EXV|1|P = 0.20586HLR|1|R:6HKO|1|R = 0.11046HLR|1|R:6HLR|1|R = 06HLR|1|R:6HLQ|1|R = 0.14646HLR|1|R:8HIM|1|P = 0.30406HLR|1|R:3HOY|1|P = 0.34736HLQ|1|R:5M5X|1|R = 0.32816HLQ|1|R:5M3F|1|R = 0.25216HLQ|1|R:7AOE|1|R = 0.23196HLQ|1|R:5FLM|1|P = 0.33586HLQ|1|R:6EXV|1|P = 0.27836HLQ|1|R:6HKO|1|R = 0.17576HLQ|1|R:6HLR|1|R = 0.14646HLQ|1|R:6HLQ|1|R = 06HLQ|1|R:8HIM|1|P = 0.36026HLQ|1|R:3HOY|1|P = 0.40928HIM|1|P:5M5X|1|R = 0.83628HIM|1|P:5M3F|1|R = 0.35018HIM|1|P:7AOE|1|R = 0.39078HIM|1|P:5FLM|1|P = 0.85638HIM|1|P:6EXV|1|P = 1.00978HIM|1|P:6HKO|1|R = 0.30588HIM|1|P:6HLR|1|R = 0.30408HIM|1|P:6HLQ|1|R = 0.36028HIM|1|P:8HIM|1|P = 08HIM|1|P:3HOY|1|P = 0.28753HOY|1|P:5M5X|1|R = 0.93943HOY|1|P:5M3F|1|R = 0.41133HOY|1|P:7AOE|1|R = 0.45943HOY|1|P:5FLM|1|P = 0.96833HOY|1|P:6EXV|1|P = 1.10963HOY|1|P:6HKO|1|R = 0.35043HOY|1|P:6HLR|1|R = 0.34733HOY|1|P:6HLQ|1|R = 0.40923HOY|1|P:8HIM|1|P = 0.28753HOY|1|P:3HOY|1|P = 05M5X|1|R5M3F|1|R7AOE|1|R5FLM|1|P6EXV|1|P6HKO|1|R6HLR|1|R6HLQ|1|R8HIM|1|P3HOY|1|PDiscrepancy0.000.200.400.600.801.00

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