NR_all_06181.5

Members (44)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7P6Z\|1\|3 (rep)	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae 70S ribosome in untreated cells	Electron microscopy	3.5	2879	2022-05-25
2	7PAL\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	4.7	2878	2022-05-25
3	7PIB\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	4.7	2878	2022-05-25
4	7PAK\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	5.3	2878	2022-05-25
5	7PHB\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	4.9	2878	2022-05-25
6	9SKE\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 50S RRF EF-G	Electron microscopy	4.8	2878	2026-09-23
7	7PIT\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	5.7	2878	2022-05-25
8	9SL6\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 70S eT-TC (flexible)	Electron microscopy	5.8	2878	2026-09-23
9	7PI9\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	6.3	2878	2022-05-25
10	7PAI\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	6.7	2878	2022-05-25
11	7PAM\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	6.8	2878	2022-05-25
12	7PAO\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7	2878	2022-05-25
13	9SL5\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 70S eT-TC (stable)	Electron microscopy	6.5	2878	2026-09-23
14	7PAJ\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7.3	2878	2022-05-25
15	9SL4\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 70S eT-TC (collided)	Electron microscopy	7.2	2878	2026-09-23
16	7PHA\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.5	2878	2022-05-25
17	7PAR\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.2	2878	2022-05-25
18	7PH9\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.7	2878	2022-05-25
19	9SKD\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 50S membrane complex	Electron microscopy	7.7	2878	2026-09-23
20	7PAU\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	Electron microscopy	8.3	2878	2022-05-25
21	7PAQ\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.9	2878	2022-05-25
22	7PIC\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.1	2878	2022-05-25
23	7PI8\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	8.9	2878	2022-05-25
24	7PIP\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.3	2878	2022-05-25
25	7PAH\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.5	2878	2022-05-25
26	7PIO\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.5	2878	2022-05-25
27	9SMD\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)	Electron microscopy	9.4	2893	2026-09-23
28	7PIQ\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.7	2878	2022-05-25
29	7PAT\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	free 50S in untreated Mycoplasma pneumoniae cells	Electron microscopy	9.2	2878	2022-05-25
30	7PAN\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.7	2878	2022-05-25
31	7PHC\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	9.9	2878	2022-05-25
32	7PIR\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	12.1	2878	2022-05-25
33	7PIA\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	13.6	2878	2022-05-25
34	7PIS\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	15	2878	2022-05-25
35	7PAS\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	16	2878	2022-05-25
36	9SL7\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 70S transertion-like (stable RNAP)	Electron microscopy	26.7	2878	2026-09-23
37	8P7X\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	Electron microscopy	3.03	2893	2024-11-20
38	8P8B\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	Electron microscopy	2.9	2893	2024-11-20
39	7OOD\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	Electron microscopy	3.4	2879	2022-05-25
40	8P7Y\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	Electron microscopy	3.7	2893	2024-11-20
41	8P6P\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells	Electron microscopy	3.2	24	2024-11-20
42	9SKF\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Model of M. pneumoniae 70S membrane complex	Electron microscopy	8.6	2878	2026-09-23
43	8P8V\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	Electron microscopy	8.7	2893	2024-11-20
44	8P8W\|1\|3	Large subunit ribosomal RNA	23S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF02541	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	Electron microscopy	8.7	2893	2024-11-20

Release history

Release	4.58
Date	2026-09-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

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This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	8P6P\|1\|3	Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.2	24
2	9SL7\|1\|3	Model of M. pneumoniae 70S transertion-like (stable RNAP)	ELECTRON MICROSCOPY	26.7	2878
3	7PAK\|1\|3	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.3	2878
4	7PHB\|1\|3	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.9	2878
5	7PAL\|1\|3	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	2878
6	7P6Z\|1\|3	Mycoplasma pneumoniae 70S ribosome in untreated cells	ELECTRON MICROSCOPY	3.5	2879
7	7OOD\|1\|3	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.4	2879
8	9SMD\|1\|3	Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)	ELECTRON MICROSCOPY	9.4	2893
9	8P8B\|1\|3	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	ELECTRON MICROSCOPY	2.9	2893
10	8P7X\|1\|3	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.03	2893
11	8P7Y\|1\|3	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	ELECTRON MICROSCOPY	3.7	2893
12	8P8W\|1\|3	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	ELECTRON MICROSCOPY	8.7	2893
13	8P8V\|1\|3	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	ELECTRON MICROSCOPY	8.7	2893
14	7PAJ\|1\|3	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7.3	2878
15	7PI9\|1\|3	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.3	2878
16	9SKF\|1\|3	Model of M. pneumoniae 70S membrane complex	ELECTRON MICROSCOPY	8.6	2878
17	9SL5\|1\|3	Model of M. pneumoniae 70S eT-TC (stable)	ELECTRON MICROSCOPY	6.5	2878
18	7PAI\|1\|3	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.7	2878
19	9SL6\|1\|3	Model of M. pneumoniae 70S eT-TC (flexible)	ELECTRON MICROSCOPY	5.8	2878
20	9SL4\|1\|3	Model of M. pneumoniae 70S eT-TC (collided)	ELECTRON MICROSCOPY	7.2	2878
21	7PIP\|1\|3	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.3	2878
22	7PHA\|1\|3	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.5	2878
23	7PH9\|1\|3	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.7	2878
24	7PIQ\|1\|3	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	2878
25	7PAH\|1\|3	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	2878
26	7PIO\|1\|3	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	2878
27	7PI8\|1\|3	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	2878
28	9SKE\|1\|3	Model of M. pneumoniae 50S RRF EF-G	ELECTRON MICROSCOPY	4.8	2878
29	7PAT\|1\|3	free 50S in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.2	2878
30	9SKD\|1\|3	Model of M. pneumoniae 50S membrane complex	ELECTRON MICROSCOPY	7.7	2878
31	7PAU\|1\|3	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.3	2878
32	7PAR\|1\|3	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.2	2878
33	7PIC\|1\|3	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.1	2878
34	7PAN\|1\|3	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	2878
35	7PAQ\|1\|3	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	2878
36	7PIB\|1\|3	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	2878
37	7PIT\|1\|3	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.7	2878
38	7PAO\|1\|3	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7	2878
39	7PAM\|1\|3	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.8	2878
40	7PHC\|1\|3	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.9	2878
41	7PIR\|1\|3	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	12.1	2878
42	7PIS\|1\|3	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	15	2878
43	7PIA\|1\|3	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	13.6	2878
44	7PAS\|1\|3	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	16	2878

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_06181.5 Current

Release history

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