NR_all_06650.40

Members (89)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7O7Y\|1\|B5+ 7O7Y\|1\|B8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	3920	2021-06-02
2	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	3920	2021-06-02
3	7OYD\|1\|5+ 7OYD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	3502	2022-07-20
4	8SCB\|1\|5+ 8SCB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S_rRNA, 5.8S_rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Terminating ribosome with SRI-41315	Electron microscopy	2.5	3686	2023-12-27
5	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome as it decodes the Sec-UGA codon	Electron microscopy	2.8	3920	2022-10-19
6	7O80\|1\|B5+ 7O80\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	3920	2021-06-02
7	8P2K\|1\|B5+ 8P2K\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and METAP1	Electron microscopy	2.9	3920	2023-07-19
8	8RJB\|1\|K+ 8RJB\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	Electron microscopy	2.69243	3699	2024-01-24
9	9QQA\|1\|B5+ 9QQA\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and NMT1	Electron microscopy	2.8	3862	2025-07-16
10	8B6C\|1\|5+ 8B6C\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	Electron microscopy	2.79	3770	2023-02-22
11	8RJD\|1\|K+ 8RJD\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	Electron microscopy	2.78574	3699	2024-01-24
12	8B5L\|1\|5+ 8B5L\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	Electron microscopy	2.86	3770	2023-03-01
13	9BDL\|1\|A28S+ 9BDL\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin	Electron microscopy	2.8	3708	2024-07-24
14	7UCK\|1\|5+ 7UCK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	3697	2022-06-01
15	8BPO\|1\|A1+ 8BPO\|1\|C1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	Electron microscopy	2.8	3694	2023-07-05
16	6SGC\|1\|54+ 6SGC\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	3754	2019-12-04
17	7OBR\|1\|5+ 7OBR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	RNC-SRP early complex	Electron microscopy	2.8	3649	2021-07-21
18	9F1B\|1\|B5+ 9F1B\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	Electron microscopy	3.01	3862	2024-08-21
19	7QWQ\|1\|5+ 7QWQ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of ribosome nascent chain with SRP and NAC	Electron microscopy	2.83	3649	2022-03-16
20	7O81\|1\|B5+ 7O81\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	3920	2021-06-02
21	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	3703	2022-05-25
22	8RJC\|1\|K+ 8RJC\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	Electron microscopy	2.90061	3699	2024-01-24
23	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome programmed with SECIS and SBP2	Electron microscopy	3.1	3888	2022-09-07
24	7QWR\|1\|5+ 7QWR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	Electron microscopy	2.9	3649	2022-03-09
25	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	3805	2022-05-25
26	7NWI\|1\|5+ 7NWI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA+BlaS, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	3818	2021-07-07
27	8BHF\|1\|A2+ 8BHF\|1\|C2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	Electron microscopy	3.1	3754	2023-09-06
28	6R6P\|1\|5+ 6R6P\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	3818	2019-07-10
29	6R5Q\|1\|5+ 6R5Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	3694	2019-07-10
30	9BDN\|1\|A28S+ 9BDN\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin and tRNAAla	Electron microscopy	3.1	3708	2024-07-24
31	6P5I\|1\|5+ 6P5I\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	3745	2019-09-18
32	6P5J\|1\|5+ 6P5J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	3745	2019-09-18
33	9F1D\|1\|B5+ 9F1D\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	Electron microscopy	3.26	3862	2024-08-21
34	6P5K\|1\|5+ 6P5K\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	3745	2019-09-18
35	6ZVK\|1\|e2+ 6ZVK\|1\|h2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	4076	2020-12-23
36	7UCJ\|1\|5+ 7UCJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	3649	2022-06-01
37	6P5N\|1\|5+ 6P5N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	3745	2019-09-25
38	7MDZ\|1\|5+ 7MDZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	3692	2021-09-01
39	6D9J\|1\|5+ 6D9J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
40	7NFX\|1\|5+ 7NFX\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	Electron microscopy	3.2	3649	2021-06-02
41	7TM3\|1\|K+ 7TM3\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.25	3699	2022-10-19
42	8BTK\|1\|B5+ 8BTK\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the TRAP complex with the Sec translocon and a translating ribosome	Electron microscopy	3.5	3920	2023-05-24
43	9QQB\|1\|B5+ 9QQB\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	Electron microscopy	3.43	3920	2025-07-16
44	6T59\|1\|54+ 6T59\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	Electron microscopy	3.11	3694	2019-11-27
45	8VFT\|1\|5+ 8VFT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Translating 80S rabbit ribosome stalled by emetine with eEF2	Electron microscopy	3.3	3685	2024-12-25
46	7A01\|1\|e2+ 7A01\|1\|h2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.6	3981	2020-12-30
47	6MTD\|1\|5+ 6MTD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	3748	2018-11-21
48	5LZS\|1\|5+ 5LZS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	3694	2016-11-30
49	5LZV\|1\|5+ 5LZV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	3694	2016-11-30
50	7QWS\|1\|5+ 7QWS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	Electron microscopy	3.4	3649	2022-03-09
51	6MTE\|1\|5+ 6MTE\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	3748	2018-11-21
52	6MTC\|1\|5+ 6MTC\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	3748	2018-11-21
53	6D90\|1\|5+ 6D90\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
54	6GZ5\|1\|A2+ 6GZ5\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	3769	2018-12-05
55	5LZZ\|1\|5+ 5LZZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	3694	2016-11-30
56	9F1C\|1\|B5+ 9F1C\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	Electron microscopy	3.78	3862	2024-08-21
57	6GZ3\|1\|A2+ 6GZ3\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	3769	2018-12-05
58	5LZW\|1\|5+ 5LZW\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	3694	2016-11-30
59	6MTB\|1\|5+ 6MTB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	3748	2018-11-21
60	6GZ4\|1\|A2+ 6GZ4\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	3769	2018-12-05
61	9BDP\|1\|A28S+ 9BDP\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	Electron microscopy	3.7	3708	2024-07-24
62	5LZT\|1\|5+ 5LZT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	3694	2016-11-30
63	7NWG\|1\|51+ 7NWG\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	Electron microscopy	3.8	3777	2021-07-07
64	5LZX\|1\|5+ 5LZX\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	3694	2016-11-30
65	6HCJ\|1\|51+ 6HCJ\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	3786	2018-10-17
66	6R6G\|1\|5+ 6R6G\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	3694	2019-07-10
67	5LZU\|1\|5+ 5LZU\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	3694	2016-11-30
68	7TUT\|1\|K+ 7TUT\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.88	3699	2022-10-19
69	6FRK\|1\|5+ 6FRK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	Electron microscopy	3.7	3814	2018-03-28
70	6HCF\|1\|52+ 6HCF\|1\|82	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	3785	2018-10-17
71	3JAH\|1\|5+ 3JAH\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	3818	2015-08-12
72	6R7Q\|1\|5+ 6R7Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	3694	2019-07-10
73	6FTI\|1\|u+ 6FTI\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	Electron microscopy	4.2	3818	2018-03-21
74	7NWH\|1\|5+ 7NWH\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	Electron microscopy	4.1	3694	2021-07-07
75	3JAG\|1\|5+ 3JAG\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	3818	2015-08-12
76	5LZY\|1\|5+ 5LZY\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	3694	2016-11-30
77	3JAI\|1\|5+ 3JAI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	3818	2015-08-12
78	3J92\|1\|5+ 3J92\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure and assembly pathway of the ribosome quality control complex	Electron microscopy	3.6	3818	2015-01-21
79	6FTJ\|1\|u+ 6FTJ\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	Electron microscopy	4.7	3818	2018-03-21
80	6HCQ\|1\|51+ 6HCQ\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	3786	2018-10-17
81	6HCM\|1\|52+ 6HCM\|1\|82	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	3785	2018-10-17
82	4UJE\|1\|A2+ 4UJE\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	3773	2014-07-16
83	6FTG\|1\|u+ 6FTG\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	Electron microscopy	9.1	3818	2018-03-21
84	3JAN\|1\|5+ 3JAN\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	3814	2015-08-05
85	3JAJ\|1\|5+ 3JAJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	3814	2015-08-05
86	4UJD\|1\|A2+ 4UJD\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	3773	2014-07-30
87	4D5Y\|1\|2+ 4D5Y\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	3773	2015-03-04
88	4D67\|1\|2+ 4D67\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RRNA, 5.8S RRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	3773	2015-03-04
89	4UJC\|1\|A2+ 4UJC\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	3773	2014-07-30

Release history

Release	3.396
Date	2025-07-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7A01\|1\|e2+ 7A01\|1\|h2	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.6	3981
2	6ZVK\|1\|e2+ 6ZVK\|1\|h2	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	4076
3	7NWI\|1\|5+ 7NWI\|1\|8	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	3818
4	6R6P\|1\|5+ 6R6P\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	3818
5	7QWS\|1\|5+ 7QWS\|1\|8	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	ELECTRON MICROSCOPY	3.4	3649
6	7QWR\|1\|5+ 7QWR\|1\|8	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	ELECTRON MICROSCOPY	2.9	3649
7	7QWQ\|1\|5+ 7QWQ\|1\|8	Ternary complex of ribosome nascent chain with SRP and NAC	ELECTRON MICROSCOPY	2.83	3649
8	7OBR\|1\|5+ 7OBR\|1\|8	RNC-SRP early complex	ELECTRON MICROSCOPY	2.8	3649
9	7NFX\|1\|5+ 7NFX\|1\|8	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	ELECTRON MICROSCOPY	3.2	3649
10	3JAG\|1\|5+ 3JAG\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	3818
11	3JAH\|1\|5+ 3JAH\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	3818
12	3JAI\|1\|5+ 3JAI\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	3818
13	6FTG\|1\|u+ 6FTG\|1\|w	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	ELECTRON MICROSCOPY	9.1	3818
14	6FTI\|1\|u+ 6FTI\|1\|w	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	ELECTRON MICROSCOPY	4.2	3818
15	6FTJ\|1\|u+ 6FTJ\|1\|w	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	ELECTRON MICROSCOPY	4.7	3818
16	6FRK\|1\|5+ 6FRK\|1\|8	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	ELECTRON MICROSCOPY	3.7	3814
17	3JAJ\|1\|5+ 3JAJ\|1\|8	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	3814
18	3JAN\|1\|5+ 3JAN\|1\|8	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	3814
19	3J92\|1\|5+ 3J92\|1\|8	Structure and assembly pathway of the ribosome quality control complex	ELECTRON MICROSCOPY	3.6	3818
20	6GZ5\|1\|A2+ 6GZ5\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	3769
21	6GZ3\|1\|A2+ 6GZ3\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	3769
22	6GZ4\|1\|A2+ 6GZ4\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	3769
23	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	3805
24	7O81\|1\|B5+ 7O81\|1\|B8	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	3920
25	9F1B\|1\|B5+ 9F1B\|1\|B8	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	ELECTRON MICROSCOPY	3.01	3862
26	8P2K\|1\|B5+ 8P2K\|1\|B8	Ternary complex of translating ribosome, NAC and METAP1	ELECTRON MICROSCOPY	2.9	3920
27	7O7Y\|1\|B5+ 7O7Y\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	3920
28	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	3920
29	9QQB\|1\|B5+ 9QQB\|1\|B8	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	ELECTRON MICROSCOPY	3.43	3920
30	9F1D\|1\|B5+ 9F1D\|1\|B8	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	ELECTRON MICROSCOPY	3.26	3862
31	9F1C\|1\|B5+ 9F1C\|1\|B8	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	ELECTRON MICROSCOPY	3.78	3862
32	9QQA\|1\|B5+ 9QQA\|1\|B8	Ternary complex of translating ribosome, NAC and NMT1	ELECTRON MICROSCOPY	2.8	3862
33	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	3703
34	9BDL\|1\|A28S+ 9BDL\|1\|A58S	80S ribosome with angiogenin	ELECTRON MICROSCOPY	2.8	3708
35	7O80\|1\|B5+ 7O80\|1\|B8	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	3920
36	8RJB\|1\|K+ 8RJB\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	ELECTRON MICROSCOPY	2.69243	3699
37	9BDN\|1\|A28S+ 9BDN\|1\|A58S	80S ribosome with angiogenin and tRNAAla	ELECTRON MICROSCOPY	3.1	3708
38	9BDP\|1\|A28S+ 9BDP\|1\|A58S	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	ELECTRON MICROSCOPY	3.7	3708
39	7UCK\|1\|5+ 7UCK\|1\|8	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	3697
40	7UCJ\|1\|5+ 7UCJ\|1\|8	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	3649
41	8B6C\|1\|5+ 8B6C\|1\|8	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	ELECTRON MICROSCOPY	2.79	3770
42	8B5L\|1\|5+ 8B5L\|1\|8	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	ELECTRON MICROSCOPY	2.86	3770
43	7OYD\|1\|5+ 7OYD\|1\|8	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	3502
44	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Rabbit 80S ribosome as it decodes the Sec-UGA codon	ELECTRON MICROSCOPY	2.8	3920
45	8BTK\|1\|B5+ 8BTK\|1\|B8	Structure of the TRAP complex with the Sec translocon and a translating ribosome	ELECTRON MICROSCOPY	3.5	3920
46	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Rabbit 80S ribosome programmed with SECIS and SBP2	ELECTRON MICROSCOPY	3.1	3888
47	8VFT\|1\|5+ 8VFT\|1\|8	Translating 80S rabbit ribosome stalled by emetine with eEF2	ELECTRON MICROSCOPY	3.3	3685
48	6P5J\|1\|5+ 6P5J\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	3745
49	6P5I\|1\|5+ 6P5I\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	3745
50	6P5K\|1\|5+ 6P5K\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	3745
51	5LZT\|1\|5+ 5LZT\|1\|8	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	3694
52	5LZY\|1\|5+ 5LZY\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	3694
53	5LZZ\|1\|5+ 5LZZ\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	3694
54	5LZX\|1\|5+ 5LZX\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	3694
55	5LZW\|1\|5+ 5LZW\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	3694
56	8BHF\|1\|A2+ 8BHF\|1\|C2	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	ELECTRON MICROSCOPY	3.1	3754
57	6SGC\|1\|54+ 6SGC\|1\|84	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	3754
58	7MDZ\|1\|5+ 7MDZ\|1\|8	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	3692
59	6MTB\|1\|5+ 6MTB\|1\|8	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	3748
60	6MTC\|1\|5+ 6MTC\|1\|8	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	3748
61	6MTD\|1\|5+ 6MTD\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	3748
62	6MTE\|1\|5+ 6MTE\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	3748
63	8SCB\|1\|5+ 8SCB\|1\|8	Terminating ribosome with SRI-41315	ELECTRON MICROSCOPY	2.5	3686
64	6R7Q\|1\|5+ 6R7Q\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	3694
65	6R5Q\|1\|5+ 6R5Q\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	3694
66	6R6G\|1\|5+ 6R6G\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	3694
67	5LZV\|1\|5+ 5LZV\|1\|8	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	3694
68	5LZU\|1\|5+ 5LZU\|1\|8	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	3694
69	5LZS\|1\|5+ 5LZS\|1\|8	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	3694
70	6T59\|1\|54+ 6T59\|1\|84	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	ELECTRON MICROSCOPY	3.11	3694
71	7TM3\|1\|K+ 7TM3\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.25	3699
72	7TUT\|1\|K+ 7TUT\|1\|v	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.88	3699
73	8BPO\|1\|A1+ 8BPO\|1\|C1	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	ELECTRON MICROSCOPY	2.8	3694
74	8RJD\|1\|K+ 8RJD\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	ELECTRON MICROSCOPY	2.78574	3699
75	8RJC\|1\|K+ 8RJC\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	ELECTRON MICROSCOPY	2.90061	3699
76	6P5N\|1\|5+ 6P5N\|1\|8	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	3745
77	6HCF\|1\|52+ 6HCF\|1\|82	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	3785
78	6HCM\|1\|52+ 6HCM\|1\|82	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	3785
79	6D90\|1\|5+ 6D90\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
80	6D9J\|1\|5+ 6D9J\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
81	7NWH\|1\|5+ 7NWH\|1\|8	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	ELECTRON MICROSCOPY	4.1	3694
82	6HCQ\|1\|51+ 6HCQ\|1\|81	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	3786
83	6HCJ\|1\|51+ 6HCJ\|1\|81	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	3786
84	7NWG\|1\|51+ 7NWG\|1\|81	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	ELECTRON MICROSCOPY	3.8	3777
85	4UJC\|1\|A2+ 4UJC\|1\|A3	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	3773
86	4UJE\|1\|A2+ 4UJE\|1\|A3	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	3773
87	4UJD\|1\|A2+ 4UJD\|1\|A3	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	3773
88	4D67\|1\|2+ 4D67\|1\|3	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	3773
89	4D5Y\|1\|2+ 4D5Y\|1\|3	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	3773

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_06650.40 Current

Release history

Parents

Children