RNA 3D Hub //

Equivalence class NR_all_08356.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16ASO|1|I (rep)U6 spliceosomal RNASaccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-ray diffraction2.712018-05-09
25VSU|1|IU6 spliceosomal RNASaccharomyces cerevisiae strain T8 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-ray diffraction3.12018-05-09
35GM6|1|E+ 5GM6|1|LU6 spliceosomal RNA + U2 splicesomal small nuclear RNASaccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionElectron microscopy3.52016-09-21
45MPS|1|6U6 spliceosomal RNASaccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00026Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
55YLZ|1|DU6 spliceosomal RNAmRNA/intron lariat, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00026Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
65Y88|1|DU6 spliceosomal RNAIntron lariat, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00026Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
75GMK|1|E+ 5GMK|1|LU6 spliceosomal RNA + U2 splicesomal small nuclear RNA5'-Splicing Site, Intron_BPS, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
85WSG|1|EU6 spliceosomal RNA3'-intron-lariat, 5'-intron-lariat, RNA (91-MER), Saccharomyces cerevisiae S288c SNR6 snRNASaccharomyces cerevisiaeEukaryaRF00026Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
95LQW|1|6+ 5LQW|1|2U6 spliceosomal RNA + U2 splicesomal small nuclear RNAactin pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004yeast activated spliceosomeElectron microscopy5.82016-10-05

Release history

Release3.3393.3403.3413.3423.343
Date2024-06-122024-06-192024-06-262024-07-032024-07-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15LQW|1|6+ 5LQW|1|2yeast activated spliceosomeELECTRON MICROSCOPY5.8102
25YLZ|1|DCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6103
35WSG|1|ECryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4103
45GMK|1|E+ 5GMK|1|LCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4103
55Y88|1|DCryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46101
65MPS|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.8599
76ASO|1|IStructure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-RAY DIFFRACTION2.7169
85VSU|1|IStructure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-RAY DIFFRACTION3.172
95GM6|1|E+ 5GM6|1|LCryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionELECTRON MICROSCOPY3.5103

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0295 s