Equivalence class NR_all_11689.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZUX|1|7 (rep) | Transfer RNA | P/E tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 77 | 2023-02-22 |
| 2 | 8T3A|1|tE | Transfer RNA | E site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2 | Electron microscopy | 2.86 | 77 | 2024-12-11 |
| 3 | 9F9S|1|DQ | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast SDD1 Disome with Mbf1 | Electron microscopy | 2.9 | 77 | 2024-12-04 |
| 4 | 6ZVI|1|e | Transfer RNA | P/E-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Mbf1-ribosome complex | Electron microscopy | 3 | 77 | 2020-09-09 |
| 5 | 6SV4|1|mc | Transfer RNA | tRNA (P/E) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 77 | 2020-03-04 |
| 6 | 6SV4|1|mb | Transfer RNA | tRNA (P/E) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 77 | 2020-03-04 |
| 7 | 7NRD|1|Sm | Transfer RNA | mRNA (32-MER), tRNA (77-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA | Electron microscopy | 4.36 | 77 | 2021-04-14 |
| 8 | 6I7O|1|mb | Transfer RNA | P/E hybrid tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 77 | 2019-01-16 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6ZVI|1|e | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 77 | |
| 2 | 7NRD|1|Sm | Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 4.36 | 77 | |
| 3 | 6SV4|1|mc | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 77 | |
| 4 | 6SV4|1|mb | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 77 | |
| 5 | 6I7O|1|mb | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 77 | |
| 6 | 7ZUX|1|7 | Collided ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 2.5 | 77 | |
| 7 | 8T3A|1|tE | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2 | ELECTRON MICROSCOPY | 2.86 | 77 | |
| 8 | 9F9S|1|DQ | Yeast SDD1 Disome with Mbf1 | ELECTRON MICROSCOPY | 2.9 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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