Equivalence class NR_all_12763.10 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZM6|1|A (rep) | Large subunit ribosomal RNA | 16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 |
| 2 | 6ZM5|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 |
| 3 | 6VMI|1|A | Large subunit ribosomal RNA | 16s rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 |
| 4 | 6VLZ|1|A | Large subunit ribosomal RNA | 16s rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 |
| 5 | 7A5J|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | Electron microscopy | 3.1 | 2020-12-23 |
| 6 | 5OOL|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.06 | 2017-09-13 |
| 7 | 7A5H|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | Electron microscopy | 3.3 | 2020-12-23 |
| 8 | 6ZSC|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 |
| 9 | 7A5K|1|A3 | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 2020-12-23 |
| 10 | 7A5I|1|A3 | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | Electron microscopy | 3.7 | 2020-12-23 |
| 11 | 6ZSD|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | Electron microscopy | 3.7 | 2020-09-16 |
| 12 | 6ZSF|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA and P/E-tRNA | Electron microscopy | 3.8 | 2021-05-05 |
| 13 | 3J9M|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
| 14 | 6I9R|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | Electron microscopy | 3.9 | 2020-07-08 |
| 15 | 5OOM|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.03 | 2017-09-13 |
| 16 | 6ZSG|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | Electron microscopy | 4 | 2020-10-14 |
| 17 | 6ZSA|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | Electron microscopy | 4 | 2020-10-21 |
| 18 | 6ZS9|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with ribosome recycling factor | Electron microscopy | 4 | 2020-10-14 |
| 19 | 3J7Y|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the large ribosomal subunit from human mitochondria | Electron microscopy | 3.4 | 2014-10-15 |
| 20 | 7A5G|1|A3 | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | Electron microscopy | 4.33 | 2020-12-23 |
| 21 | 6NU2|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 3.9 | 2019-04-17 |
| 22 | 7A5F|1|A3 | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | Electron microscopy | 4.4 | 2020-12-23 |
| 23 | 6ZSB|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | Electron microscopy | 4.5 | 2020-09-16 |
| 24 | 6NU3|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 4.4 | 2019-04-17 |
| 25 | 6ZSE|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | Electron microscopy | 5 | 2020-09-16 |
Release history
| Release | 3.177 |
|---|---|
| Date | 2021-05-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_12763.10 | NR_all_12763.9 | 3.177 | (24) 3J7Y|1|A, 3J9M|1|A, 5OOL|1|A, 5OOM|1|A, 6I9R|1|A, 6NU2|1|A, 6NU3|1|A, 6VLZ|1|A, 6VMI|1|A, 6ZM5|1|A, 6ZM6|1|A, 6ZS9|1|XA, 6ZSA|1|XA, 6ZSB|1|XA, 6ZSC|1|XA, 6ZSD|1|XA, 6ZSE|1|XA, 6ZSG|1|XA, 7A5F|1|A3, 7A5G|1|A3, 7A5H|1|A, 7A5I|1|A3, 7A5J|1|A, 7A5K|1|A3 | (1) 6ZSF|1|XA | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_12763.10 | NR_all_12763.11 | 3.178 | (24) 3J7Y|1|A, 3J9M|1|A, 5OOL|1|A, 5OOM|1|A, 6I9R|1|A, 6NU2|1|A, 6NU3|1|A, 6VLZ|1|A, 6VMI|1|A, 6ZM5|1|A, 6ZM6|1|A, 6ZS9|1|XA, 6ZSA|1|XA, 6ZSB|1|XA, 6ZSC|1|XA, 6ZSD|1|XA, 6ZSE|1|XA, 6ZSG|1|XA, 7A5F|1|A3, 7A5G|1|A3, 7A5H|1|A, 7A5I|1|A3, 7A5J|1|A, 7A5K|1|A3 | (1) 6ZSF|1|XA | (2) 7L08|1|A, 7L20|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5OOM|1|A | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 1092 | |
| 2 | 6ZM6|1|A | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 1531 | |
| 3 | 6ZM5|1|A | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 1534 | |
| 4 | 6ZS9|1|XA | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 1501 | |
| 5 | 6ZSF|1|XA | Human mitochondrial ribosome in complex with mRNA and P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 1501 | |
| 6 | 6ZSD|1|XA | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 1501 | |
| 7 | 6ZSC|1|XA | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 1501 | |
| 8 | 6ZSA|1|XA | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 1501 | |
| 9 | 6ZSG|1|XA | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 1501 | |
| 10 | 6ZSB|1|XA | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 1501 | |
| 11 | 6ZSE|1|XA | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 1501 | |
| 12 | 6I9R|1|A | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | ELECTRON MICROSCOPY | 3.9 | 1498 | |
| 13 | 7A5H|1|A | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 1457 | |
| 14 | 5OOL|1|A | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 1441 | |
| 15 | 7A5J|1|A | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 1492 | |
| 16 | 7A5K|1|A3 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 1503 | |
| 17 | 7A5I|1|A3 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 1485 | |
| 18 | 7A5G|1|A3 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 1503 | |
| 19 | 7A5F|1|A3 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 1503 | |
| 20 | 3J9M|1|A | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 1472 | |
| 21 | 3J7Y|1|A | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 1473 | |
| 22 | 6NU3|1|A | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 4.4 | 1472 | |
| 23 | 6NU2|1|A | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 1472 | |
| 24 | 6VLZ|1|A | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 1527 | |
| 25 | 6VMI|1|A | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 1527 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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