#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16EM3|1|2 (rep)5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.22017-12-27
26EM4|1|25.8S ribosomal RNASaccharomyces cerevisiae genomic DNA sequence contains ITS1, 5.8S rRNA gene, ITS2, strain IMA 105YSaccharomyces cerevisiaeEukaryaRF00002State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.12017-12-27
36EM5|1|25.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.32017-12-27
46I7O|1|BS5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
56I7O|1|YS5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
64V7F|1|25.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002Arx1 pre-60S particle.Electron microscopy8.72014-07-09
75FL8|1|y5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
85JCS|1|y5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52016-11-16

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.269
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_13071.1NR_all_61239.13.152(5) 4V7F|1|2, 5FL8|1|y, 5JCS|1|y, 6I7O|1|BS, 6I7O|1|YS(3) 6EM3|1|2, 6EM4|1|2, 6EM5|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_13071.1NR_all_13071.23.270(7) 4V7F|1|2, 5JCS|1|y, 6EM3|1|2, 6EM4|1|2, 6EM5|1|2, 6I7O|1|BS, 6I7O|1|YS(1) 5FL8|1|y(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16I7O|1|BSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3157
26I7O|1|YSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3157
35JCS|1|yCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5158
45FL8|1|yCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5158
56EM4|1|2State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.1158
64V7F|1|2Arx1 pre-60S particle.ELECTRON MICROSCOPY8.7158
76EM5|1|2State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.3158
86EM3|1|2State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.2157

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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