RNA 3D Hub //

Equivalence class NR_all_13304.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
11XST|1|A (rep)RNA (27-MER)Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.Solution NMR272004-12-28
21XSG|1|ARNase P RNA P4 stemSolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69A mutationSolution NMR272004-12-28
31XSU|1|ARNA (27-MER)Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.Solution NMR272004-12-28
41XSH|1|ARNase P RNA P4 stemSolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutationSolution NMR272004-12-28
51F7G|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURESSolution NMR272000-10-09
61F79|1|ARNASE P RNA RIBOZYME, P4 DOMAIN MUTANTSOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURESolution NMR272000-10-09
72CD6|1|A5'-R(*GP*GP*AP*AP*GP*UP*UP*CP*CP*GP *UP*CP*UP*UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliRefinement of RNase P P4 stemloop structure using residual dipolar coupling data, C70U mutant cobalt(III) hexammine complexSolution NMR272007-05-01
82CD3|1|A5'-R(*GP*GP*AP*AP*GP*UP*UP*CP*GP*GP *UP*CP*UP*UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliRefinement of RNase P P4 stemloop structure using residual dipolar coupling data - C70U mutantSolution NMR272007-05-01
91F6Z|1|ARNASE P RNA RIBOZYME, P4 DOMAIN MUTANTSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDESolution NMR272000-10-09
102CD1|1|A5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliRefinement of P4 stemloop structure using residual dipolar coupling dataSolution NMR272007-05-01
112CD5|1|A5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliRefinement of RNase P P4 stemloop structure using residual dipolar couplings - cobalt(III) hexammine complex structureSolution NMR272007-05-01
121F7I|2|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURESSolution NMR272000-10-09
131F6X|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDESolution NMR272000-10-09
141F78|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURESolution NMR272000-10-09
151F7F|3|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURESSolution NMR272000-10-09
161F7H|5|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURESSolution NMR272000-10-09

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_13304.1NR_all_00165.12.93(1) 1F7H|5|A(15) 1F6X|1|A, 1F6Z|1|A, 1F78|1|A, 1F79|1|A, 1F7F|3|A, 1F7G|1|A, 1F7I|2|A, 1XSG|1|A, 1XSH|1|A, 1XST|1|A, 1XSU|1|A, 2CD1|1|A, 2CD3|1|A, 2CD5|1|A, 2CD6|1|A(0)
NR_all_13304.1NR_all_36362.12.93(7) 1F6Z|1|A, 1F79|1|A, 1F7I|2|A, 1XSH|1|A, 1XSU|1|A, 2CD3|1|A, 2CD6|1|A(9) 1F6X|1|A, 1F78|1|A, 1F7F|3|A, 1F7G|1|A, 1F7H|5|A, 1XSG|1|A, 1XST|1|A, 2CD1|1|A, 2CD5|1|A(0)
NR_all_13304.1NR_all_52143.12.93(2) 1XSG|1|A, 1XST|1|A(14) 1F6X|1|A, 1F6Z|1|A, 1F78|1|A, 1F79|1|A, 1F7F|3|A, 1F7G|1|A, 1F7H|5|A, 1F7I|2|A, 1XSH|1|A, 1XSU|1|A, 2CD1|1|A, 2CD3|1|A, 2CD5|1|A, 2CD6|1|A(0)
NR_all_13304.1NR_all_56766.12.93(5) 1F6X|1|A, 1F78|1|A, 1F7F|3|A, 2CD1|1|A, 2CD5|1|A(11) 1F6Z|1|A, 1F79|1|A, 1F7G|1|A, 1F7H|5|A, 1F7I|2|A, 1XSG|1|A, 1XSH|1|A, 1XST|1|A, 1XSU|1|A, 2CD3|1|A, 2CD6|1|A(0)
NR_all_13304.1NR_all_83539.12.93(1) 1F7G|1|A(15) 1F6X|1|A, 1F6Z|1|A, 1F78|1|A, 1F79|1|A, 1F7F|3|A, 1F7H|5|A, 1F7I|2|A, 1XSG|1|A, 1XSH|1|A, 1XST|1|A, 1XSU|1|A, 2CD1|1|A, 2CD3|1|A, 2CD5|1|A, 2CD6|1|A(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
11XSH|1|ASolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutationSOLUTION NMR27
21XSU|1|ASolution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.SOLUTION NMR27
32CD3|1|ARefinement of RNase P P4 stemloop structure using residual dipolar coupling data - C70U mutantSOLUTION NMR27
42CD6|1|ARefinement of RNase P P4 stemloop structure using residual dipolar coupling data, C70U mutant cobalt(III) hexammine complexSOLUTION NMR27
51F6Z|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDESOLUTION NMR27
61F79|1|ASOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURESOLUTION NMR27
71F7I|2|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURESSOLUTION NMR27
81F7G|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURESSOLUTION NMR27
91XST|1|ASolution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.SOLUTION NMR27
101XSG|1|ASolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69A mutationSOLUTION NMR27
112CD1|1|ARefinement of P4 stemloop structure using residual dipolar coupling dataSOLUTION NMR27
121F6X|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDESOLUTION NMR27
132CD5|1|ARefinement of RNase P P4 stemloop structure using residual dipolar couplings - cobalt(III) hexammine complex structureSOLUTION NMR27
141F78|1|ASOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURESOLUTION NMR27
151F7F|3|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURESSOLUTION NMR27
161F7H|5|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURESSOLUTION NMR27

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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