Equivalence class NR_all_13942.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2L8W|1|A+ 2L8W|1|B (rep) | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs | Solution NMR | 18 | 2011-02-23 | |||||
| 2 | 2L8U|1|A+ 2L8U|1|B | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with one hydrogen bond pair | Solution NMR | 18 | 2011-02-23 | |||||
| 3 | 2L8C|1|A+ 2L8C|1|B | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs | Solution NMR | 18 | 2011-02-23 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_13942.1 | NR_all_28013.1 | 2.46 | (1) 2L8C|1|A+2L8C|1|B | (2) 2L8U|1|A+2L8U|1|B, 2L8W|1|A+2L8W|1|B | (0) |
| NR_all_13942.1 | NR_all_50568.1 | 2.46 | (1) 2L8W|1|A+2L8W|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8U|1|A+2L8U|1|B | (0) |
| NR_all_13942.1 | NR_all_98877.1 | 2.46 | (1) 2L8U|1|A+2L8U|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8W|1|A+2L8W|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_13942.1 | NR_all_00317.1 | 2.93 | (1) 2L8U|1|A+2L8U|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8W|1|A+2L8W|1|B | (0) |
| NR_all_13942.1 | NR_all_39445.1 | 2.93 | (1) 2L8C|1|A+2L8C|1|B | (2) 2L8U|1|A+2L8U|1|B, 2L8W|1|A+2L8W|1|B | (0) |
| NR_all_13942.1 | NR_all_68992.1 | 2.93 | (1) 2L8W|1|A+2L8W|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8U|1|A+2L8U|1|B | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 2L8W|1|A+ 2L8W|1|B | r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs | SOLUTION NMR | 18 | ||
| 2 | 2L8C|1|A+ 2L8C|1|B | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs | SOLUTION NMR | 18 | ||
| 3 | 2L8U|1|A+ 2L8U|1|B | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with one hydrogen bond pair | SOLUTION NMR | 18 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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