Equivalence class NR_all_15841.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2KF0|2|A (rep) | RNA (5'-R(*GP*GP*UP*UP*CP*CP*CP*CP*UP*GP*CP*AP*UP*AP*AP*GP*GP*AP*UP*GP*AP*AP*CP*C)-3') | NMR structure of U6 ISL at pH 7.0 | Solution NMR | 2009-07-21 | |||||
2 | 1NZ1|1|A | SP U6 Intramolecular Stem-Loop RNA | Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80 | Solution NMR | 2003-05-13 | |||||
3 | 2KEZ|1|A | RNA (5'-R(*GP*GP*UP*UP*CP*CP*CP*CP*UP*GP*CP*AP*UP*AP*AP*GP*GP*AP*UP*GP*AP*AP*CP*C)-3') | NMR structure of U6 ISL at pH 8.0 | Solution NMR | 2009-07-21 | |||||
4 | 1LC6|7|A | U6 Intramolecular Stem-loop RNA | Solution Structure of the U6 Intramolecular Stem-loop RNA | Solution NMR | 2002-05-29 | |||||
5 | 1SY4|5|A | U6 Intramolecular Stem-Loop RNA | Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS) | Solution NMR | 2004-04-06 | |||||
6 | 1SYZ|2|A | U6 INTRAMOLECULAR STEM-LOOP RNA | Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7 | Solution NMR | 2004-11-09 | |||||
7 | 1NC0|2|A | U80G U6 RNA Intramolecular Stem-Loop | U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae | Solution NMR | 2003-02-25 |
Release history
Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
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Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_15841.1 | NR_all_12262.1 | 2.93 | (2) 1NZ1|1|A, 1SYZ|2|A | (5) 1LC6|7|A, 1NC0|2|A, 1SY4|5|A, 2KEZ|1|A, 2KF0|2|A | (0) |
NR_all_15841.1 | NR_all_34197.1 | 2.93 | (2) 2KEZ|1|A, 2KF0|2|A | (5) 1LC6|7|A, 1NC0|2|A, 1NZ1|1|A, 1SY4|5|A, 1SYZ|2|A | (0) |
NR_all_15841.1 | NR_all_53829.1 | 2.93 | (1) 1SY4|5|A | (6) 1LC6|7|A, 1NC0|2|A, 1NZ1|1|A, 1SYZ|2|A, 2KEZ|1|A, 2KF0|2|A | (0) |
NR_all_15841.1 | NR_all_59452.1 | 2.93 | (1) 1NC0|2|A | (6) 1LC6|7|A, 1NZ1|1|A, 1SY4|5|A, 1SYZ|2|A, 2KEZ|1|A, 2KF0|2|A | (0) |
NR_all_15841.1 | NR_all_80533.1 | 2.93 | (1) 1LC6|7|A | (6) 1NC0|2|A, 1NZ1|1|A, 1SY4|5|A, 1SYZ|2|A, 2KEZ|1|A, 2KF0|2|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 1SYZ|2|A | Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7 | SOLUTION NMR | 24 | ||
2 | 1NZ1|1|A | Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80 | SOLUTION NMR | 23 | ||
3 | 2KF0|2|A | NMR structure of U6 ISL at pH 7.0 | SOLUTION NMR | 24 | ||
4 | 2KEZ|1|A | NMR structure of U6 ISL at pH 8.0 | SOLUTION NMR | 24 | ||
5 | 1SY4|5|A | Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS) | SOLUTION NMR | 24 | ||
6 | 1LC6|7|A | Solution Structure of the U6 Intramolecular Stem-loop RNA | SOLUTION NMR | 24 | ||
7 | 1NC0|2|A | U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae | SOLUTION NMR | 24 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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