RNA 3D Hub //

Equivalence class NR_all_16232.7 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18VAW|1|A+ 8VAW|1|B (rep)Magnesium catalyzed nonenzymatic RNA primer extension productsynthetic constructMagnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomerX-ray diffraction1.25302024-04-17
28VAX|1|AAA+ 8VAX|1|BBBCadmium catalyzed nonenzymatic RNA primer extension productsynthetic constructCadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomerX-ray diffraction1.417302024-04-17
39YD3|1|A+ 9YD3|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA primer non-enzymatic extension product with RNA substrateX-ray diffraction1.592302025-10-22
45L00|1|A+ 5L00|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.25302016-12-07
55L00|1|C+ 5L00|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.25302016-12-07
65KRG|1|C+ 5KRG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.6302016-12-07
75KRG|1|A+ 5KRG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.6302016-12-07
87U87|1|A+ 7U87|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3')synthetic constructProduct of 13mer primer with activated G monomer diastereomer 1X-ray diffraction1.701302023-03-15
96U6J|1|A+ 6U6J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3')synthetic constructRNA-monomer complex containing pyrophosphate linkageX-ray diffraction1.6302019-11-20
105V0H|1|A+ 5V0H|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA duplex with 2-MeImpG analogue bound-one binding siteX-ray diffraction1.9302017-03-08
117U89|1|A+ 7U89|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3')synthetic constructProduct of 14mer primer with activated G monomer diastereomer 1X-ray diffraction1.65302023-03-15
126C8O|1|A+ 6C8O|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer, 3h soakingX-ray diffraction1.85302018-05-30
137U8A|1|A+ 7U8A|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3')synthetic constructProduct of 14mer primer with activated G monomer diastereomer 2X-ray diffraction2.1302023-03-15
147U88|1|A+ 7U88|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3')synthetic constructProduct of 13mer primer with activated G monomer diastereomer 2X-ray diffraction2.14302023-03-15
156C8N|1|A+ 6C8N|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 2h soakingX-ray diffraction1.9302018-05-30
166C8M|1|A+ 6C8M|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'), RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer, 1.5h soakingX-ray diffraction2.4292018-05-30

Release history

Release4.10
Date2025-10-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15KRG|1|A+ 5KRG|1|BRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.630
25KRG|1|C+ 5KRG|1|DRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.630
36U6J|1|A+ 6U6J|1|BRNA-monomer complex containing pyrophosphate linkageX-RAY DIFFRACTION1.630
45L00|1|A+ 5L00|1|BSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2530
55L00|1|C+ 5L00|1|DSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2530
67U89|1|A+ 7U89|1|BProduct of 14mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.6530
77U88|1|A+ 7U88|1|BProduct of 13mer primer with activated G monomer diastereomer 2X-RAY DIFFRACTION2.1430
85V0H|1|A+ 5V0H|1|BRNA duplex with 2-MeImpG analogue bound-one binding siteX-RAY DIFFRACTION1.930
97U87|1|A+ 7U87|1|BProduct of 13mer primer with activated G monomer diastereomer 1X-RAY DIFFRACTION1.70130
107U8A|1|A+ 7U8A|1|BProduct of 14mer primer with activated G monomer diastereomer 2X-RAY DIFFRACTION2.130
118VAW|1|A+ 8VAW|1|BMagnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomerX-RAY DIFFRACTION1.2530
128VAX|1|AAA+ 8VAX|1|BBBCadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomerX-RAY DIFFRACTION1.41730
139YD3|1|A+ 9YD3|1|BRNA primer non-enzymatic extension product with RNA substrateX-RAY DIFFRACTION1.59230
146C8O|1|A+ 6C8O|1|BRNA-activated 2-AIpG monomer, 3h soakingX-RAY DIFFRACTION1.8530
156C8N|1|A+ 6C8N|1|BRNA-activated 2-AIpG monomer complex, 2h soakingX-RAY DIFFRACTION1.930
166C8M|1|A+ 6C8M|1|BRNA-activated 2-AIpG monomer, 1.5h soakingX-RAY DIFFRACTION2.429

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0373 s