#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18V87|1|6 (rep)ITS2 RNASaccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)Electron microscopy2.662024-05-01
28V83|1|6Saccharomyces cerevisiae ITS-2Saccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)Electron microscopy2.532024-05-01
38V84|1|6ITS2 RNASaccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)Electron microscopy2.72024-05-01
47OHQ|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.12021-11-03
56M62|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.22020-08-26
66EM3|1|65.8S ribosomal RNASaccharomyces cerevisiaeState A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.22017-12-27
77BTB|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.222020-10-28
87OHX|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AElectron microscopy3.32021-11-03
96ELZ|1|6Internal transcribed spacer 2Saccharomyces cerevisiaeState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.32017-12-27
106C0F|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 2)Electron microscopy3.72018-03-14
113JCT|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
126EM1|1|65.8S ribosomal RNASaccharomyces cerevisiaeState C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.62017-12-27
136YLY|1|6ITS2Saccharomyces cerevisiaepre-60S State NE2 (TAP-Flag-Nop53)Electron microscopy3.82020-07-29
148E5T|1|3ITS2 ribosomal RNASaccharomyces cerevisiae BY4741Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateElectron microscopy42023-04-12
157OHP|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AElectron microscopy3.92021-11-03
167OHV|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CElectron microscopy3.92021-11-03
176YLX|1|6ITS2Saccharomyces cerevisiaepre-60S State NE1 (TAP-Flag-Nop53)Electron microscopy3.92020-07-29
187OHW|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BElectron microscopy3.52021-11-03
196EM4|1|6internal transcribed spacer 1Saccharomyces cerevisiaeState B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.12017-12-27
206EM5|1|6Internal Transcribed Spacer 2Saccharomyces cerevisiaeState D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.32017-12-27
217OHS|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population F from S. cerevisiaeElectron microscopy4.382021-11-03
226CB1|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 3)Electron microscopy4.62018-03-14
235Z3G|1|CITS2 RNASaccharomyces cerevisiaeCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)Electron microscopy3.652018-04-11
247OHR|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population E from S. cerevisiaeElectron microscopy4.722021-11-10

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.364
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17OHX|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.365
26ELZ|1|6State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.365
36EM1|1|6State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.665
47OHR|1|6Nog1-TAP associated immature ribosomal particle population E from S. cerevisiaeELECTRON MICROSCOPY4.7265
57OHV|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CELECTRON MICROSCOPY3.965
67OHS|1|6Nog1-TAP associated immature ribosomal particle population F from S. cerevisiaeELECTRON MICROSCOPY4.3865
77OHW|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.565
87OHP|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AELECTRON MICROSCOPY3.965
95Z3G|1|CCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.6565
108E5T|1|3Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateELECTRON MICROSCOPY487
116CB1|1|6Yeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.687
126C0F|1|6Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.787
137BTB|1|6Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.2265
143JCT|1|6Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.0865
156M62|1|6Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.265
167OHQ|1|6Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.165
178V87|1|660S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)ELECTRON MICROSCOPY2.6687
188V84|1|660S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)ELECTRON MICROSCOPY2.758
198V83|1|660S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)ELECTRON MICROSCOPY2.5358
206YLX|1|6pre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.965
216YLY|1|6pre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.865
226EM5|1|6State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.365
236EM4|1|6State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.165
246EM3|1|6State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.265

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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