#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16ELZ|1|6 (rep)Internal transcribed spacer 2Saccharomyces cerevisiaeState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.32017-12-27
26C0F|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 2)Electron microscopy3.72018-03-14
33JCT|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
46EM1|1|65.8S ribosomal RNASaccharomyces cerevisiaeState C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.62017-12-27
56YLY|1|6ITS2Saccharomyces cerevisiaepre-60S State NE2 (TAP-Flag-Nop53)Electron microscopy3.82020-07-29
66YLX|1|6ITS2Saccharomyces cerevisiaepre-60S State NE1 (TAP-Flag-Nop53)Electron microscopy3.92020-07-29
76CB1|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 3)Electron microscopy4.62018-03-14
85Z3G|1|CITS2 RNASaccharomyces cerevisiaeCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)Electron microscopy3.652018-04-11

Release history

Release3.1373.1383.1393.140
Date2020-07-292020-08-052020-08-122020-08-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_18489.3NR_all_18489.23.137(6) 3JCT|1|6, 5Z3G|1|C, 6C0F|1|6, 6CB1|1|6, 6ELZ|1|6, 6EM1|1|6(2) 6YLX|1|6, 6YLY|1|6(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_18489.3NR_all_18489.43.141(8) 3JCT|1|6, 5Z3G|1|C, 6C0F|1|6, 6CB1|1|6, 6ELZ|1|6, 6EM1|1|6, 6YLX|1|6, 6YLY|1|6(0) (1) 6M62|1|6

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16ELZ|1|6State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.365
26EM1|1|6State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.665
33JCT|1|6Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.0865
46C0F|1|6Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.787
56CB1|1|6Yeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.687
65Z3G|1|CCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.6565
76YLX|1|6pre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.965
86YLY|1|6pre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.865

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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