#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16CB3|1|B (rep)RNA (99-MER)Lactococcus lactisCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-ray diffraction1.892018-06-13
26CB3|1|ARNA (99-MER)Lactococcus lactisCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-ray diffraction1.892018-06-13
34Y1J|1|AyybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-ray diffraction2.242015-04-08
44Y1J|1|ByybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-ray diffraction2.242015-04-08
56CC3|1|AyybP-ykoY manganese riboswitchRNA (101-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-ray diffraction2.72018-06-13
64Y1I|1|ALactococcus lactis yybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-ray diffraction2.852015-04-08
74Y1I|1|BLactococcus lactis yybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-ray diffraction2.852015-04-08
86CC3|1|ByybP-ykoY manganese riboswitchRNA (101-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-ray diffraction2.72018-06-13
96CC1|1|ByybP-ykoY manganese riboswitchRNA (94-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-ray diffraction2.542018-06-13
106CC1|1|AyybP-ykoY manganese riboswitchRNA (94-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-ray diffraction2.542018-06-13

Release history

Release3.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.365
Date2019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_18848.1NR_all_00143.13.59(4) 4Y1I|1|A, 4Y1I|1|B, 4Y1J|1|A, 4Y1J|1|B(6) 6CB3|1|A, 6CB3|1|B, 6CC1|1|A, 6CC1|1|B, 6CC3|1|A, 6CC3|1|B(0)
NR_all_18848.1NR_all_66115.13.59(6) 6CB3|1|A, 6CB3|1|B, 6CC1|1|A, 6CC1|1|B, 6CC3|1|A, 6CC3|1|B(4) 4Y1I|1|A, 4Y1I|1|B, 4Y1J|1|A, 4Y1J|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14Y1J|1|BLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-RAY DIFFRACTION2.24100
24Y1J|1|ALactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-RAY DIFFRACTION2.24100
34Y1I|1|ALactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-RAY DIFFRACTION2.85100
44Y1I|1|BLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-RAY DIFFRACTION2.85100
56CB3|1|BCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-RAY DIFFRACTION1.8999
66CC1|1|BCrystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.54100
76CC1|1|ACrystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.5494
86CB3|1|ACrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-RAY DIFFRACTION1.8999
96CC3|1|ACrystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.7100
106CC3|1|BCrystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.792

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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