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Equivalence class NR_all_20829.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNARNA (59-MER), U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
26J6G|1|L+ 6J6G|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAACT1 pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.22019-04-24
36EXN|1|2+ 6EXN|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAIntron lariat: UBC4 RNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
45LJ3|1|Z+ 5LJ3|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAIntron of UBC4 pre-mRNA, U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
55ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAPre-mRNA-BPS, U2 snRNA, U4 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
66J6H|1|L+ 6J6H|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAACT1 pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.62019-04-24
75MQ0|1|2+ 5MQ0|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAS.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
86J6N|1|L+ 6J6N|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.862019-04-24
96J6Q|1|L+ 6J6Q|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.72019-04-24
105ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAPre-mRNA, U2 snRNA, U4 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
115NRL|1|2+ 5NRL|1|4+ 5NRL|1|6U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Structure of a pre-catalytic spliceosomeElectron microscopy7.22017-05-31
125LJ5|1|Z+ 5LJ5|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAIntron of UBC4 pre-mRNA, U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release3.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_20829.7NR_all_20829.63.71(8) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5MQ0|1|2+5MQ0|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6(4) 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_20829.7NR_all_01315.13.99(6) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(6) 5MQ0|1|2+5MQ0|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6(0)
NR_all_20829.7NR_all_01643.13.99(1) 6EXN|1|2+6EXN|1|6(11) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5MQ0|1|2+5MQ0|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)
NR_all_20829.7NR_all_10510.13.99(2) 5MQ0|1|2+5MQ0|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i(10) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6EXN|1|2+6EXN|1|6, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)
NR_all_20829.7NR_all_36828.13.99(1) 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F(11) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5MQ0|1|2+5MQ0|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)
NR_all_20829.7NR_all_55865.13.99(1) 5NRL|1|2+5NRL|1|4+5NRL|1|6(11) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5MQ0|1|2+5MQ0|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)
NR_all_20829.7NR_all_99228.13.99(1) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F(11) 5LJ3|1|Z+5LJ3|1|V, 5LJ5|1|Z+5LJ5|1|V, 5MQ0|1|2+5MQ0|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6, 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|FCryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4206
25ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|FCryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9150
35NRL|1|2+ 5NRL|1|4+ 5NRL|1|6Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.2152
45LJ3|1|Z+ 5LJ3|1|VStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8171
55LJ5|1|Z+ 5LJ5|1|VOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10171
66J6Q|1|L+ 6J6Q|1|ECryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7210
76J6N|1|L+ 6J6N|1|ECryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86205
86J6G|1|L+ 6J6G|1|ECryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2208
96J6H|1|L+ 6J6H|1|ECryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6209
105MQ0|1|2+ 5MQ0|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17155
116BK8|1|2+ 6BK8|1|6+ 6BK8|1|iS. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3135
126EXN|1|2+ 6EXN|1|6Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7136

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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