Equivalence class NR_all_21112.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4GKJ|1|X+ 4GKJ|1|W (rep) | mRNA A-site fragment, tRNA ASL human mitochondrial Met | synthetic construct | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin. | X-ray diffraction | 3.3 | 2013-06-05 | |||
| 2 | 2KRY|1|A | RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3') | Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 | Solution NMR | 2010-08-18 | |||||
| 3 | 4GKK|1|X+ 4GKK|1|W | mRNA A-site fragment, tRNA ASL human mitochondrial Met | synthetic construct | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin | X-ray diffraction | 3.2 | 2013-06-05 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_21112.1 | NR_all_28251.1 | 2.46 | (1) 2KRY|1|A | (2) 4GKJ|1|X+4GKJ|1|W, 4GKK|1|X+4GKK|1|W | (0) |
| NR_all_21112.1 | NR_all_59636.1 | 2.46 | (1) 4GKK|1|X+4GKK|1|W | (2) 2KRY|1|A, 4GKJ|1|X+4GKJ|1|W | (0) |
| NR_all_21112.1 | NR_all_95777.1 | 2.46 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 2KRY|1|A, 4GKK|1|X+4GKK|1|W | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_21112.1 | NR_all_73684.1 | 2.93 | (1) 4GKK|1|X+4GKK|1|W | (2) 2KRY|1|A, 4GKJ|1|X+4GKJ|1|W | (0) |
| NR_all_21112.1 | NR_all_79459.1 | 2.93 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 2KRY|1|A, 4GKK|1|X+4GKK|1|W | (0) |
| NR_all_21112.1 | NR_all_83774.1 | 2.93 | (1) 2KRY|1|A | (2) 4GKJ|1|X+4GKJ|1|W, 4GKK|1|X+4GKK|1|W | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4GKK|1|X+ 4GKK|1|W | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin | X-RAY DIFFRACTION | 3.2 | 5 | |
| 2 | 4GKJ|1|X+ 4GKJ|1|W | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin. | X-RAY DIFFRACTION | 3.3 | 8 | |
| 3 | 2KRY|1|A | Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 | SOLUTION NMR | 15 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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