Equivalence class NR_all_21258.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9H4J|1|B+ 9H4J|1|C+ 9H4J|1|D (rep) | Trans-activating crRNA | EMX1-1 sgRNA, Non-Target Strand, Target Strand | synthetic construct | Synthetic | RF02348 | dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle | Electron microscopy | 3.1 | 187 | 2026-04-01 |
| 2 | 9H4K|1|B+ 9H4K|1|C+ 9H4K|1|D | Trans-activating crRNA | EMX1-1 sgRNA, Non-Target Strand, Target Strand | synthetic construct | Synthetic | RF02348 | dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle | Electron microscopy | 2.6 | 142 | 2026-04-01 |
| 3 | 9H4L|1|B+ 9H4L|1|C | Trans-activating crRNA | EMX1-1 sgRNA, Non-Target Strand, Target Strand | synthetic construct | Synthetic | RF02348 | dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle | Electron microscopy | 3.9 | 107 | 2026-04-01 |
| 4 | 9H4M|1|B+ 9H4M|1|F | Trans-activating crRNA | EMX1-1 sgRNA, Target Strand Post-Cut | synthetic construct | Synthetic | RF02348 | wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle | Electron microscopy | 3.8 | 115 | 2026-04-01 |
Release history
| Release | 4.33 |
|---|---|
| Date | 2026-04-01 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9H4K|1|B+ 9H4K|1|C+ 9H4K|1|D | dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle | ELECTRON MICROSCOPY | 2.6 | 142 | |
| 2 | 9H4J|1|B+ 9H4J|1|C+ 9H4J|1|D | dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle | ELECTRON MICROSCOPY | 3.1 | 187 | |
| 3 | 9H4L|1|B+ 9H4L|1|C | dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle | ELECTRON MICROSCOPY | 3.9 | 107 | |
| 4 | 9H4M|1|B+ 9H4M|1|F | wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle | ELECTRON MICROSCOPY | 3.8 | 115 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: