RNA 3D Hub //

Equivalence class NR_all_21280.21 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14KZY|1|i (rep)Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-ray diffraction7.012013-07-24
24KZZ|1|iSmall subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
34KZX|1|iSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1.X-ray diffraction7.812013-07-24
47O7Y|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
57O7Z|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
67JQB|1|ASmall subunit ribosomal RNArRNAOryctolagus cuniculusEukaryaRF01960SARS-CoV-2 Nsp1 and rabbit 40S ribosome complexElectron microscopy2.72020-12-02
77UCK|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF0196080S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
86SGC|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
97TOR|1|A18SSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
107O80|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
117NWI|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.132021-07-07
126YAL|1|2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian 48S late-stage initiation complex with beta-globin mRNAElectron microscopy32020-04-08
136R5Q|1|KSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10
147TOQ|1|A18SSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRElectron microscopy3.12022-05-25
157O81|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.12021-06-02
166ZVK|1|K3Small subunit ribosomal RNA18S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF01960The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.492020-12-23
176P5I|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
186P5K|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.12019-09-18
196P5J|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.12019-09-18
207UCJ|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S translation initiation complex with mRNA and HarringtonineElectron microscopy3.12022-06-01
216P4G|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
227MDZ|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF0196080S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.22021-09-01
236R6P|1|KSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.12019-07-10
246P4H|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.22019-09-18
256P5N|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.22019-09-25
266D9J|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
277JQC|1|ASmall subunit ribosomal RNArRNAOryctolagus cuniculusEukaryaRF01960SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complexElectron microscopy3.32020-12-02
285LZS|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
296W2T|1|aSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)Electron microscopy3.362020-04-22
307A01|1|K3Small subunit ribosomal RNA18S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF01960The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.62020-12-30
316MTD|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
325LZV|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
336D90|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
346YAN|1|2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian 48S late-stage translation initiation complex with histone 4 mRNAElectron microscopy3.482020-04-08
356MTC|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
366MTE|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
376W2S|1|ASmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)Electron microscopy3.472020-04-22
386GZ5|1|B1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
395LZZ|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
405LZW|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
415LZX|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
426GZ3|1|B1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)Electron microscopy3.62018-12-05
437NWG|1|A2Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.Electron microscopy3.82021-07-07
446GZ4|1|B1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)Electron microscopy3.62018-12-05
455LZT|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
466YAM|1|2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNAElectron microscopy3.62020-04-08
476MTB|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
486HCJ|1|A2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
496R6G|1|KSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex with SRP.Electron microscopy3.72019-07-10
505LZU|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
516HCF|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
526R7Q|1|KSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex with Sec61.Electron microscopy3.92019-07-10
533JAH|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
545LZY|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
557NWH|1|9Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.Electron microscopy4.12021-07-07
565FLX|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Mammalian 40S HCV-IRES complexElectron microscopy3.92015-12-23
573JAG|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
583JAI|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
595K0Y|1|ASmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceElectron microscopy5.82016-07-13
606HCQ|1|A2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit collided di-ribosome (collided monosome)Electron microscopy6.52018-10-17
616HCM|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit collided di-ribosome (stalled monosome)Electron microscopy6.82018-10-17
624UJE|1|B1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16
633JAN|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
643JAJ|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
654UJD|1|C1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30
664D61|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-03-04
674D5L|1|1Small subunit ribosomal RNA18S RRNA 2Oryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-02-04
684UJC|1|C1Small subunit ribosomal RNA18S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30

Release history

Release3.2333.2343.2353.2363.2373.238
Date2022-06-012022-06-082022-06-152022-06-222022-06-292022-07-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_21280.21NR_all_21280.203.233(66) 3JAG|1|9, 3JAH|1|9, 3JAI|1|9, 3JAJ|1|S2, 3JAN|1|S2, 4D5L|1|1, 4D61|1|1, 4KZX|1|i, 4KZY|1|i, 4KZZ|1|i, 4UJC|1|C1, 4UJD|1|C1, 4UJE|1|B1, 5FLX|1|1, 5K0Y|1|A, 5LZS|1|9, 5LZT|1|9, 5LZU|1|9, 5LZV|1|9, 5LZW|1|9, 5LZX|1|9, 5LZY|1|9, 5LZZ|1|9, 6D90|1|2, 6D9J|1|2, 6GZ3|1|B1, 6GZ4|1|B1, 6GZ5|1|B1, 6HCF|1|A1, 6HCJ|1|A2, 6HCM|1|A1, 6HCQ|1|A2, 6MTB|1|9, 6MTC|1|9, 6MTD|1|9, 6MTE|1|9, 6P4G|1|2, 6P4H|1|2, 6P5I|1|2, 6P5J|1|2, 6P5K|1|2, 6P5N|1|2, 6R5Q|1|K, 6R6G|1|K, 6R6P|1|K, 6R7Q|1|K, 6SGC|1|A1, 6W2S|1|A, 6W2T|1|a, 6YAL|1|2, 6YAM|1|2, 6YAN|1|2, 6ZVK|1|K3, 7A01|1|K3, 7JQB|1|A, 7JQC|1|A, 7MDZ|1|9, 7NWG|1|A2, 7NWH|1|9, 7NWI|1|9, 7O7Y|1|A2, 7O7Z|1|A2, 7O80|1|A2, 7O81|1|A2, 7TOQ|1|A18S, 7TOR|1|A18S(2) 7UCJ|1|9, 7UCK|1|9(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_21280.21NR_all_21280.223.239(68) 3JAG|1|9, 3JAH|1|9, 3JAI|1|9, 3JAJ|1|S2, 3JAN|1|S2, 4D5L|1|1, 4D61|1|1, 4KZX|1|i, 4KZY|1|i, 4KZZ|1|i, 4UJC|1|C1, 4UJD|1|C1, 4UJE|1|B1, 5FLX|1|1, 5K0Y|1|A, 5LZS|1|9, 5LZT|1|9, 5LZU|1|9, 5LZV|1|9, 5LZW|1|9, 5LZX|1|9, 5LZY|1|9, 5LZZ|1|9, 6D90|1|2, 6D9J|1|2, 6GZ3|1|B1, 6GZ4|1|B1, 6GZ5|1|B1, 6HCF|1|A1, 6HCJ|1|A2, 6HCM|1|A1, 6HCQ|1|A2, 6MTB|1|9, 6MTC|1|9, 6MTD|1|9, 6MTE|1|9, 6P4G|1|2, 6P4H|1|2, 6P5I|1|2, 6P5J|1|2, 6P5K|1|2, 6P5N|1|2, 6R5Q|1|K, 6R6G|1|K, 6R6P|1|K, 6R7Q|1|K, 6SGC|1|A1, 6W2S|1|A, 6W2T|1|a, 6YAL|1|2, 6YAM|1|2, 6YAN|1|2, 6ZVK|1|K3, 7A01|1|K3, 7JQB|1|A, 7JQC|1|A, 7MDZ|1|9, 7NWG|1|A2, 7NWH|1|9, 7NWI|1|9, 7O7Y|1|A2, 7O7Z|1|A2, 7O80|1|A2, 7O81|1|A2, 7TOQ|1|A18S, 7TOR|1|A18S, 7UCJ|1|9, 7UCK|1|9(0) (12) 7SYG|1|2, 7SYH|1|2, 7SYI|1|2, 7SYJ|1|2, 7SYK|1|2, 7SYL|1|2, 7SYM|1|2, 7SYN|1|2, 7SYT|1|2, 7SYU|1|2, 7SYW|1|2, 7SYX|1|2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14UJD|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.91742
24UJC|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.51742
34D5L|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
44D61|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
54UJE|1|B1Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.91742
65K0Y|1|Am48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceELECTRON MICROSCOPY5.81776
74KZX|1|iRabbit 40S ribosomal subunit in complex with eIF1.X-RAY DIFFRACTION7.811797
84KZY|1|iRabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-RAY DIFFRACTION7.011840
94KZZ|1|iRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.031797
103JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
113JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
123JAI|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
133JAG|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
143JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
157NWI|1|9Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.131719
166YAM|1|2Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNAELECTRON MICROSCOPY3.61742
176YAL|1|2Mammalian 48S late-stage initiation complex with beta-globin mRNAELECTRON MICROSCOPY31743
186YAN|1|2Mammalian 48S late-stage translation initiation complex with histone 4 mRNAELECTRON MICROSCOPY3.481743
197NWH|1|9Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.ELECTRON MICROSCOPY4.11698
206HCJ|1|A2Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.81740
216HCQ|1|A2Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.51740
227NWG|1|A2Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.ELECTRON MICROSCOPY3.81740
236HCF|1|A1Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.91732
246HCM|1|A1Structure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.81732
256D90|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.21697
266P5N|1|2Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.21697
277JQB|1|ASARS-CoV-2 Nsp1 and rabbit 40S ribosome complexELECTRON MICROSCOPY2.71697
287MDZ|1|980S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.21697
296SGC|1|A1Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.81697
305LZY|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
315LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
325LZX|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
335LZW|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
345LZU|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
355LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
365LZT|1|9Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
375LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
386MTB|1|9Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.61664
396MTC|1|9Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.41664
406R7Q|1|KStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.91698
416R5Q|1|KStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY31698
426R6G|1|KStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.71698
437TOR|1|A18SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.91691
447UCJ|1|9Mammalian 80S translation initiation complex with mRNA and HarringtonineELECTRON MICROSCOPY3.11664
457UCK|1|980S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.81664
467TOQ|1|A18SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRELECTRON MICROSCOPY3.11690
476R6P|1|KStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.11698
487O81|1|A2Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.11688
497O80|1|A2Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.91688
507O7Z|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.41688
517O7Y|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.21688
526GZ5|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.51708
536ZVK|1|K3The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.491869
547A01|1|K3The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.61801
557JQC|1|ASARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complexELECTRON MICROSCOPY3.31697
566P4H|1|2Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.21697
576P4G|1|2Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.11697
586P5K|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.11697
596P5I|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.11697
606P5J|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.11697
616MTE|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.41664
626MTD|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.31692
636GZ3|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.61708
646GZ4|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.61708
655FLX|1|1Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708
666W2T|1|aStructure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)ELECTRON MICROSCOPY3.361697
676W2S|1|AStructure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)ELECTRON MICROSCOPY3.471697
686D9J|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.21697

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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