Equivalence class NR_all_24235.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LGT|1|E (rep) | stem-loop of 23S rRNA | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-ray diffraction | 1.3 | 2013-11-20 | ||||
| 2 | 4LGT|1|F | stem-loop of 23S rRNA | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-ray diffraction | 1.3 | 2013-11-20 | ||||
| 3 | 3DH3|1|F+ 3DH3|1|E | stem loop fragment of E. Coli 23S RNA | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-ray diffraction | 3 | 2009-04-28 | ||||
| 4 | 3DH3|1|G+ 3DH3|1|H | stem loop fragment of E. Coli 23S RNA | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-ray diffraction | 3 | 2009-04-28 | ||||
| 5 | 3J0E|1|D | ribosomal 23S RNA | Escherichia coli | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | Electron microscopy | 9.9 | 2012-04-25 | |||
| 6 | 3J0D|1|E | ribosomal 23S RNA | Escherichia coli | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | Electron microscopy | 11.1 | 2012-04-25 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_24235.1 | NR_all_07845.1 | 2.93 | (2) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H | (4) 3J0D|1|E, 3J0E|1|D, 4LGT|1|E, 4LGT|1|F | (0) |
| NR_all_24235.1 | NR_all_10684.1 | 2.93 | (2) 4LGT|1|E, 4LGT|1|F | (4) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H, 3J0D|1|E, 3J0E|1|D | (0) |
| NR_all_24235.1 | NR_all_37484.1 | 2.93 | (2) 3J0D|1|E, 3J0E|1|D | (4) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H, 4LGT|1|E, 4LGT|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_24235.1 | NR_all_10994.1 | 3.99 | (2) 3J0D|1|E, 3J0E|1|D | (4) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H, 4LGT|1|E, 4LGT|1|F | (0) |
| NR_all_24235.1 | NR_all_51791.1 | 3.99 | (2) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H | (4) 3J0D|1|E, 3J0E|1|D, 4LGT|1|E, 4LGT|1|F | (0) |
| NR_all_24235.1 | NR_all_86334.1 | 3.99 | (2) 4LGT|1|E, 4LGT|1|F | (4) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H, 3J0D|1|E, 3J0E|1|D | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3J0D|1|E | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 11.1 | 19 | |
| 2 | 3J0E|1|D | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 9.9 | 19 | |
| 3 | 4LGT|1|E | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-RAY DIFFRACTION | 1.3 | 20 | |
| 4 | 4LGT|1|F | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-RAY DIFFRACTION | 1.3 | 19 | |
| 5 | 3DH3|1|G+ 3DH3|1|H | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-RAY DIFFRACTION | 3 | 21 | |
| 6 | 3DH3|1|F+ 3DH3|1|E | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-RAY DIFFRACTION | 3 | 21 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: