Equivalence class NR_all_24610.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7NSH|1|BA (rep) | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2 | Electron microscopy | 3.2 | 1544 | 2021-05-05 |
| 2 | 6GAW|1|BA | Large subunit ribosomal RNA | 16S ribosomal RNA, mitochondrial | Sus scrofa | Mitochondria | RF02541 | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome. | Electron microscopy | 3.2 | 1549 | 2018-08-22 |
| 3 | 6GB2|1|BA | Large subunit ribosomal RNA | 16S ribosomal RNA, mitochondrial | Sus scrofa | Mitochondria | RF02541 | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit. | Electron microscopy | 3.2 | 1549 | 2018-08-08 |
| 4 | 7NQL|1|BA | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | Electron microscopy | 3.4 | 1544 | 2021-05-05 |
| 5 | 8OIQ|1|B8 | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 3.5 | 1571 | 2023-06-14 |
| 6 | 7NQH|1|BA | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | Electron microscopy | 3.5 | 1544 | 2021-05-05 |
| 7 | 8OIN|1|B8 | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA | Electron microscopy | 3.6 | 1571 | 2023-06-14 |
| 8 | 4V19|1|A | Large subunit ribosomal RNA | MITORIBOSOMAL 16S RRNA, TRNA | Sus scrofa | Mitochondria | RF02541 | Structure of the large subunit of the mammalian mitoribosome, part 1 of 2 | Electron microscopy | 3.4 | 1515 | 2014-10-08 |
| 9 | 7NSJ|1|BA | Large subunit ribosomal RNA | 16S rRNA, tRNA(P/P) and tRNA(E*) | Sus scrofa | Mitochondria | RF02541 | 55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*) | Electron microscopy | 3.9 | 1544 | 2021-06-02 |
| 10 | 5AJ4|1|BA | Large subunit ribosomal RNA | MITORIBOSOMAL 16S Ribosomal RNA | Sus scrofa | Mitochondria | RF02541 | Structure of the 55S mammalian mitoribosome. | Electron microscopy | 3.8 | 1515 | 2015-04-22 |
| 11 | 7NSI|1|BA | Large subunit ribosomal RNA | 16S rRNA | Sus scrofa | Mitochondria | RF02541 | 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) | Electron microscopy | 4.6 | 1544 | 2021-06-02 |
| 12 | 4CE4|1|A | Large subunit ribosomal RNA | 16S Ribosomal RNA | Sus scrofa | Mitochondria | RF02541 | 39S large subunit of the porcine mitochondrial ribosome | Electron microscopy | 4.9 | 1444 | 2013-12-18 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7NSH|1|BA | 39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2 | ELECTRON MICROSCOPY | 3.2 | 1544 | |
| 2 | 6GB2|1|BA | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit. | ELECTRON MICROSCOPY | 3.2 | 1549 | |
| 3 | 6GAW|1|BA | Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome. | ELECTRON MICROSCOPY | 3.2 | 1549 | |
| 4 | 7NQH|1|BA | 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet | ELECTRON MICROSCOPY | 3.5 | 1544 | |
| 5 | 7NQL|1|BA | 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet | ELECTRON MICROSCOPY | 3.4 | 1544 | |
| 6 | 7NSI|1|BA | 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) | ELECTRON MICROSCOPY | 4.6 | 1544 | |
| 7 | 7NSJ|1|BA | 55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*) | ELECTRON MICROSCOPY | 3.9 | 1544 | |
| 8 | 8OIQ|1|B8 | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.5 | 1571 | |
| 9 | 8OIN|1|B8 | 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.6 | 1571 | |
| 10 | 4V19|1|A | Structure of the large subunit of the mammalian mitoribosome, part 1 of 2 | ELECTRON MICROSCOPY | 3.4 | 1515 | |
| 11 | 5AJ4|1|BA | Structure of the 55S mammalian mitoribosome. | ELECTRON MICROSCOPY | 3.8 | 1515 | |
| 12 | 4CE4|1|A | 39S large subunit of the porcine mitochondrial ribosome | ELECTRON MICROSCOPY | 4.9 | 1444 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: