Equivalence class NR_all_24979.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QYZ|1|A (rep) | Bacteriophage pRNA | the prohead RNA (71-MER) in bacteriophage phi29 | Bacillus virus phi29 | Viruses | RF00044 | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | Electron microscopy | 4.6 | 69 | 2019-06-12 |
| 2 | 6QYZ|1|D | Bacteriophage pRNA | the prohead RNA (71-MER) in bacteriophage phi29 | Bacillus virus phi29 | Viruses | RF00044 | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | Electron microscopy | 4.6 | 69 | 2019-06-12 |
| 3 | 6QYZ|1|E | Bacteriophage pRNA | the prohead RNA (71-MER) in bacteriophage phi29 | Bacillus virus phi29 | Viruses | RF00044 | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | Electron microscopy | 4.6 | 69 | 2019-06-12 |
| 4 | 6QYZ|1|B | Bacteriophage pRNA | the prohead RNA (71-MER) in bacteriophage phi29 | Bacillus virus phi29 | Viruses | RF00044 | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | Electron microscopy | 4.6 | 69 | 2019-06-12 |
| 5 | 6QYZ|1|C | Bacteriophage pRNA | the prohead RNA (71-MER) in bacteriophage phi29 | Bacillus virus phi29 | Viruses | RF00044 | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | Electron microscopy | 4.6 | 69 | 2019-06-12 |
| 6 | 1FOQ|1|B | Bacteriophage pRNA | BACTERIOPHAGE PHI29 PROHEAD RNA | Bacillus virus phi29 | Viruses | RF00044 | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | Electron microscopy | 20 | 109 | 2000-12-22 |
| 7 | 1FOQ|1|A | Bacteriophage pRNA | BACTERIOPHAGE PHI29 PROHEAD RNA | Bacillus virus phi29 | Viruses | RF00044 | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | Electron microscopy | 20 | 109 | 2000-12-22 |
| 8 | 1FOQ|1|C | Bacteriophage pRNA | BACTERIOPHAGE PHI29 PROHEAD RNA | Bacillus virus phi29 | Viruses | RF00044 | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | Electron microscopy | 20 | 109 | 2000-12-22 |
| 9 | 1FOQ|1|E | Bacteriophage pRNA | BACTERIOPHAGE PHI29 PROHEAD RNA | Bacillus virus phi29 | Viruses | RF00044 | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | Electron microscopy | 20 | 109 | 2000-12-22 |
| 10 | 1FOQ|1|D | Bacteriophage pRNA | BACTERIOPHAGE PHI29 PROHEAD RNA | Bacillus virus phi29 | Viruses | RF00044 | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | Electron microscopy | 20 | 109 | 2000-12-22 |
Release history
| Release | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_24979.1 | NR_all_27833.1 | 3.99 | (5) 1FOQ|1|A, 1FOQ|1|B, 1FOQ|1|C, 1FOQ|1|D, 1FOQ|1|E | (5) 6QYZ|1|A, 6QYZ|1|B, 6QYZ|1|C, 6QYZ|1|D, 6QYZ|1|E | (0) |
| NR_all_24979.1 | NR_all_58737.1 | 3.99 | (5) 6QYZ|1|A, 6QYZ|1|B, 6QYZ|1|C, 6QYZ|1|D, 6QYZ|1|E | (5) 1FOQ|1|A, 1FOQ|1|B, 1FOQ|1|C, 1FOQ|1|D, 1FOQ|1|E | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1FOQ|1|D | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY | 20 | 109 | |
| 2 | 1FOQ|1|C | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY | 20 | 109 | |
| 3 | 1FOQ|1|B | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY | 20 | 109 | |
| 4 | 1FOQ|1|A | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY | 20 | 109 | |
| 5 | 1FOQ|1|E | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY | 20 | 109 | |
| 6 | 6QYZ|1|B | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | ELECTRON MICROSCOPY | 4.6 | 69 | |
| 7 | 6QYZ|1|C | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | ELECTRON MICROSCOPY | 4.6 | 69 | |
| 8 | 6QYZ|1|A | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | ELECTRON MICROSCOPY | 4.6 | 69 | |
| 9 | 6QYZ|1|D | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | ELECTRON MICROSCOPY | 4.6 | 69 | |
| 10 | 6QYZ|1|E | The cryo-EM structure of prohead RNA in bacteriophage phi29 prohead | ELECTRON MICROSCOPY | 4.6 | 69 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: