Equivalence class NR_all_25301.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8RDU|1|1+ 8RDU|1|3+ 8RDU|1|6+ 8RDU|1|4+ 8RDU|1|5+ 8RDU|1|2+ 8RDU|1|7 (rep) | LE, Non-target strand - LE, Non-target strand - RE, RE, sgRNA, Target strand, Target strand -LE | Scytonema hofmannii | Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map | Electron microscopy | 2.3 | 526 | 2024-06-19 | |||
| 2 | 8EA4|1|7+ 8EA4|1|1+ 8EA4|1|4+ 8EA4|1|3+ 8EA4|1|2+ 8EA4|1|5+ 8EA4|1|6 | LE_R, Non-target_R, RE_F, RE_R1, RE_R2, sg_RNA, Target-LE | synthetic construct | V-K CAST Transpososome from Scytonema hofmanni, minor configuration | Electron microscopy | 3 | 495 | 2022-11-30 | |||
| 3 | 8RKT|1|1+ 8RKT|1|3+ 8RKT|1|2 | Non-target strand - LE, sgRNA, Target strand - LE | Scytonema hofmannii | Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map | Electron microscopy | 2.35 | 312 | 2024-06-19 | |||
| 4 | 8EA3|1|7+ 8EA3|1|1+ 8EA3|1|4+ 8EA3|1|3+ 8EA3|1|2+ 8EA3|1|5+ 8EA3|1|6 | LE_R, Non-target_R, RE_F, RE_R1, RE_R2, sg_RNA, Target_LE | synthetic construct | V-K CAST Transpososome from Scytonema hofmanni, major configuration | Electron microscopy | 3.7 | 495 | 2022-11-30 | |||
| 5 | 8BD5|1|B+ 8BD5|1|C+ 8BD5|1|D | DNA non-target strand, DNA target strand, sgRNA | Scytonema hofmannii | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | Electron microscopy | 3.3 | 328 | 2022-12-28 | |||
| 6 | 7PLA|1|B+ 7PLA|1|C+ 7PLA|1|D | DNA non-target strand, DNA target strand, sgRNA | Scytonema hofmannii | Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target | Electron microscopy | 3.04 | 244 | 2021-12-01 | |||
| 7 | 8AXA|1|B+ 8AXA|1|C | DNA non-target strand, DNA target strand, sgRNA | Scytonema hofmannii | Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon) | Electron microscopy | 2.96 | 248 | 2024-04-10 | |||
| 8 | 8AXB|1|B | sgRNA | Scytonema hofmannii | Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon) | Electron microscopy | 2.87 | 230 | 2024-04-10 | |||
| 9 | 7N3P|1|B+ 7N3P|1|C+ 7N3P|1|D | DNA (5'-D(*CP*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*AP*AP*CP*CP*GP*AP*GP*TP*TP*T)-3'), DNA (5'-D(P*AP*AP*AP*CP*TP*CP*GP*GP*TP*T)-3'), Single guide RNA | Scytonema hofmannii | Cryo-EM structure of the Cas12k-sgRNA-dsDNA complex | Electron microscopy | 3.65 | 259 | 2021-09-01 | |||
| 10 | 7N3O|1|B | Single guide RNA | Scytonema hofmannii | Cryo-EM structure of the Cas12k-sgRNA complex | Electron microscopy | 3.8 | 222 | 2021-09-01 | |||
| 11 | 8BD6|1|B+ 8BD6|1|C+ 8BD6|1|D | DNA non-target strand, DNA target strand, sgRNA | Scytonema hofmannii | Cas12k-sgRNA-dsDNA-TnsC non-productive complex | Electron microscopy | 4.1 | 261 | 2022-12-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8RKT|1|1+ 8RKT|1|3+ 8RKT|1|2 | Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map | ELECTRON MICROSCOPY | 2.35 | 312 | |
| 2 | 8RDU|1|1+ 8RDU|1|3+ 8RDU|1|6+ 8RDU|1|4+ 8RDU|1|5+ 8RDU|1|2+ 8RDU|1|7 | Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map | ELECTRON MICROSCOPY | 2.3 | 526 | |
| 3 | 8EA4|1|7+ 8EA4|1|1+ 8EA4|1|4+ 8EA4|1|3+ 8EA4|1|2+ 8EA4|1|5+ 8EA4|1|6 | V-K CAST Transpososome from Scytonema hofmanni, minor configuration | ELECTRON MICROSCOPY | 3 | 495 | |
| 4 | 8EA3|1|7+ 8EA3|1|1+ 8EA3|1|4+ 8EA3|1|3+ 8EA3|1|2+ 8EA3|1|5+ 8EA3|1|6 | V-K CAST Transpososome from Scytonema hofmanni, major configuration | ELECTRON MICROSCOPY | 3.7 | 495 | |
| 5 | 8BD5|1|B+ 8BD5|1|C+ 8BD5|1|D | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | ELECTRON MICROSCOPY | 3.3 | 328 | |
| 6 | 8BD6|1|B+ 8BD6|1|C+ 8BD6|1|D | Cas12k-sgRNA-dsDNA-TnsC non-productive complex | ELECTRON MICROSCOPY | 4.1 | 261 | |
| 7 | 7PLA|1|B+ 7PLA|1|C+ 7PLA|1|D | Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target | ELECTRON MICROSCOPY | 3.04 | 244 | |
| 8 | 8AXA|1|B+ 8AXA|1|C | Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon) | ELECTRON MICROSCOPY | 2.96 | 248 | |
| 9 | 8AXB|1|B | Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon) | ELECTRON MICROSCOPY | 2.87 | 230 | |
| 10 | 7N3O|1|B | Cryo-EM structure of the Cas12k-sgRNA complex | ELECTRON MICROSCOPY | 3.8 | 222 | |
| 11 | 7N3P|1|B+ 7N3P|1|C+ 7N3P|1|D | Cryo-EM structure of the Cas12k-sgRNA-dsDNA complex | ELECTRON MICROSCOPY | 3.65 | 259 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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