Equivalence class NR_all_29342.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6YSI|1|1 (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | Electron microscopy | 2.5 | 2020-09-16 |
| 2 | 6V3A|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 2020-02-05 |
| 3 | 6YHS|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | Electron microscopy | 2.7 | 2020-09-16 |
| 4 | 6V3B|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 2020-02-05 |
| 5 | 6V3D|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | Electron microscopy | 2.95 | 2020-02-05 |
| 6 | 6V39|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 2020-02-05 |
Release history
| Release | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_29342.2 | NR_all_29342.1 | 3.144 | (4) 6V39|1|AN1, 6V3A|1|AN1, 6V3B|1|AN1, 6V3D|1|AN1 | (2) 6YHS|1|1, 6YSI|1|1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_29342.2 | NR_all_96169.1 | 3.179 | (6) 6V39|1|AN1, 6V3A|1|AN1, 6V3B|1|AN1, 6V3D|1|AN1, 6YHS|1|1, 6YSI|1|1 | (0) | (5) 7M4V|1|A, 7M4W|1|A, 7M4X|1|A, 7M4Y|1|A, 7M4Z|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6V39|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 2877 | |
| 2 | 6V3D|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | ELECTRON MICROSCOPY | 2.95 | 2877 | |
| 3 | 6V3B|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 2877 | |
| 4 | 6V3A|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 2877 | |
| 5 | 6YHS|1|1 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | ELECTRON MICROSCOPY | 2.7 | 2672 | |
| 6 | 6YSI|1|1 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | ELECTRON MICROSCOPY | 2.5 | 2672 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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