Equivalence class NR_all_30457.11 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6J6G|1|D (rep) | U5 spliceosomal RNA | ACT1 pre-mRNA, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | Electron microscopy | 3.2 | 2019-04-24 |
| 2 | 6BK8|1|5 | U5 spliceosomal RNA | RNA (34-MER), U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 2018-02-21 |
| 3 | 5GMK|1|D | U5 spliceosomal RNA | 5'-Exon, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 4 | 5Y88|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | Electron microscopy | 3.46 | 2018-08-01 |
| 5 | 6EXN|1|5 | U5 spliceosomal RNA | Ligated exons: UBC4 mRNA, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 6 | 5YLZ|1|B | U5 spliceosomal RNA | mRNA/intron lariat, U2 snRNA, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
| 7 | 6J6H|1|D | U5 spliceosomal RNA | ACT1 pre-mRNA, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | Electron microscopy | 3.6 | 2019-04-24 |
| 8 | 5LJ3|1|U | U5 spliceosomal RNA | Exon 1 (5' exon) of UBC4 pre-mRNA, U5 snRNA (small nuclear RNA) | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 9 | 5ZWM|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | Electron microscopy | 3.4 | 2018-08-29 |
| 10 | 5GAN|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | Electron microscopy | 3.7 | 2016-01-27 |
| 11 | 5MPS|1|5 | U5 spliceosomal RNA | U5 snRNA, UBC4 gene exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 12 | 6J6N|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | Electron microscopy | 3.86 | 2019-04-24 |
| 13 | 6J6Q|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | Electron microscopy | 3.7 | 2019-04-24 |
| 14 | 5WSG|1|D | U5 spliceosomal RNA | 5'-exon, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
| 15 | 5MQ0|1|5 | U5 spliceosomal RNA | 5'-EXON OF UBC4 PRE-MRNA, Saccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 4.17 | 2017-01-18 |
| 16 | 5GAM|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.7 | 2016-02-03 |
| 17 | 5ZWO|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | Electron microscopy | 3.9 | 2018-08-29 |
| 18 | 3JCM|1|F | U5 spliceosomal RNA | pre-mRNA, SNR6 snRNA, SNR7-L snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.8 | 2016-02-24 |
| 19 | 5LQW|1|5 | U5 spliceosomal RNA | actin pre-mRNA, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | yeast activated spliceosome | Electron microscopy | 5.8 | 2016-10-05 |
| 20 | 5NRL|1|5 | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a pre-catalytic spliceosome | Electron microscopy | 7.2 | 2017-05-31 |
| 21 | 5LJ5|1|U | U5 spliceosomal RNA | Exon 1 (5' exon) of UBC4 pre-mRNA, U5 snRNA (small nuclear RNA) | Saccharomyces cerevisiae | Eukarya | RF00020 | Overall structure of the yeast spliceosome immediately after branching. | Electron microscopy | 10 | 2016-08-31 |
Release history
| Release | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_30457.11 | NR_all_30457.10 | 3.71 | (17) 3JCM|1|F, 5GAM|1|U, 5GAN|1|U, 5GMK|1|D, 5LJ3|1|U, 5LJ5|1|U, 5LQW|1|5, 5MPS|1|5, 5MQ0|1|5, 5NRL|1|5, 5WSG|1|D, 5Y88|1|B, 5YLZ|1|B, 5ZWM|1|B, 5ZWO|1|B, 6BK8|1|5, 6EXN|1|5 | (4) 6J6G|1|D, 6J6H|1|D, 6J6N|1|D, 6J6Q|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_30457.11 | NR_all_30457.12 | 3.99 | (14) 5GMK|1|D, 5LJ3|1|U, 5LJ5|1|U, 5MPS|1|5, 5MQ0|1|5, 5WSG|1|D, 5Y88|1|B, 5YLZ|1|B, 6BK8|1|5, 6EXN|1|5, 6J6G|1|D, 6J6H|1|D, 6J6N|1|D, 6J6Q|1|D | (7) 3JCM|1|F, 5GAM|1|U, 5GAN|1|U, 5LQW|1|5, 5NRL|1|5, 5ZWM|1|B, 5ZWO|1|B | (0) |
| NR_all_30457.11 | NR_all_71335.1 | 3.99 | (4) 3JCM|1|F, 5NRL|1|5, 5ZWM|1|B, 5ZWO|1|B | (17) 5GAM|1|U, 5GAN|1|U, 5GMK|1|D, 5LJ3|1|U, 5LJ5|1|U, 5LQW|1|5, 5MPS|1|5, 5MQ0|1|5, 5WSG|1|D, 5Y88|1|B, 5YLZ|1|B, 6BK8|1|5, 6EXN|1|5, 6J6G|1|D, 6J6H|1|D, 6J6N|1|D, 6J6Q|1|D | (0) |
| NR_all_30457.11 | NR_all_97263.1 | 3.99 | (3) 5GAM|1|U, 5GAN|1|U, 5LQW|1|5 | (18) 3JCM|1|F, 5GMK|1|D, 5LJ3|1|U, 5LJ5|1|U, 5MPS|1|5, 5MQ0|1|5, 5NRL|1|5, 5WSG|1|D, 5Y88|1|B, 5YLZ|1|B, 5ZWM|1|B, 5ZWO|1|B, 6BK8|1|5, 6EXN|1|5, 6J6G|1|D, 6J6H|1|D, 6J6N|1|D, 6J6Q|1|D | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3JCM|1|F | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.8 | 113 | |
| 2 | 5ZWM|1|B | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 175 | |
| 3 | 5ZWO|1|B | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 175 | |
| 4 | 5NRL|1|5 | Structure of a pre-catalytic spliceosome | ELECTRON MICROSCOPY | 7.2 | 170 | |
| 5 | 6EXN|1|5 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 171 | |
| 6 | 6J6H|1|D | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 179 | |
| 7 | 6J6G|1|D | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | ELECTRON MICROSCOPY | 3.2 | 179 | |
| 8 | 6J6N|1|D | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | ELECTRON MICROSCOPY | 3.86 | 179 | |
| 9 | 6J6Q|1|D | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | ELECTRON MICROSCOPY | 3.7 | 179 | |
| 10 | 6BK8|1|5 | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 103 | |
| 11 | 5YLZ|1|B | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 117 | |
| 12 | 5WSG|1|D | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 117 | |
| 13 | 5GMK|1|D | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 | |
| 14 | 5Y88|1|B | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | ELECTRON MICROSCOPY | 3.46 | 117 | |
| 15 | 5MQ0|1|5 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 141 | |
| 16 | 5MPS|1|5 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 141 | |
| 17 | 5LJ5|1|U | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 141 | |
| 18 | 5LJ3|1|U | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 | |
| 19 | 5GAM|1|U | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.7 | 141 | |
| 20 | 5GAN|1|U | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | ELECTRON MICROSCOPY | 3.7 | 141 | |
| 21 | 5LQW|1|5 | yeast activated spliceosome | ELECTRON MICROSCOPY | 5.8 | 141 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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