Equivalence class NR_all_31583.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6WB0|1|D+ 6WB0|1|C (rep) | HIV primer binding site (PBS) | HIV-1 viral RNA genome fragment, tRNA lysine 3 | Homo sapiens | Viruses | RF00375 | +3 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state) | Electron microscopy | 4.2 | 2020-06-24 |
| 2 | 6WB2|1|D | HIV-1 viral RNA genome fragment, tRNA lysine 3 | Homo sapiens | +3 extended HIV-1 reverse transcriptase initiation complex core (displaced state) | Electron microscopy | 4.5 | 2020-06-24 | |||
| 3 | 6WB1|1|D | HIV-1 viral RNA genome fragment, tRNA lysine 3 | Homo sapiens | +3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state) | Electron microscopy | 4.7 | 2020-06-24 | |||
| 4 | 6B19|1|C+ 6B19|1|D | HIV primer binding site (PBS) | RNA genome fragment, tRNA lysine3 | Human immunodeficiency virus 1 | Viruses | RF00375 | Architecture of HIV-1 reverse transcriptase initiation complex core | Electron microscopy | 4.5 | 2018-04-25 |
| 5 | 7K1Z|9|A | HIV primer binding site (PBS) | RNA (103-MER) | Human immunodeficiency virus 1 | Viruses | RF00375 | Solution structure of the HIV-1 PBS-segment | Solution scattering, solution NMR | 2020-09-23 |
Release history
| Release | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_31583.1 | NR_all_47604.1 | 3.145 | (1) 6B19|1|C+6B19|1|D | (4) 6WB0|1|D+6WB0|1|C, 6WB1|1|D, 6WB2|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_55535.1 | 3.145 | (1) 6WB2|1|D | (4) 6B19|1|C+6B19|1|D, 6WB0|1|D+6WB0|1|C, 6WB1|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_63705.1 | 3.145 | (1) 6WB0|1|D+6WB0|1|C | (4) 6B19|1|C+6B19|1|D, 6WB1|1|D, 6WB2|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_81231.1 | 3.145 | (1) 6WB1|1|D | (4) 6B19|1|C+6B19|1|D, 6WB0|1|D+6WB0|1|C, 6WB2|1|D, 7K1Z|9|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_31583.1 | NR_all_42621.1 | 3.170 | (1) 6WB1|1|D | (4) 6B19|1|C+6B19|1|D, 6WB0|1|D+6WB0|1|C, 6WB2|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_70680.1 | 3.170 | (1) 6WB0|1|D+6WB0|1|C | (4) 6B19|1|C+6B19|1|D, 6WB1|1|D, 6WB2|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_98766.1 | 3.170 | (1) 6B19|1|C+6B19|1|D | (4) 6WB0|1|D+6WB0|1|C, 6WB1|1|D, 6WB2|1|D, 7K1Z|9|A | (0) |
| NR_all_31583.1 | NR_all_99630.1 | 3.170 | (1) 6WB2|1|D | (4) 6B19|1|C+6B19|1|D, 6WB0|1|D+6WB0|1|C, 6WB1|1|D, 7K1Z|9|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6WB1|1|D | +3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state) | ELECTRON MICROSCOPY | 4.7 | 38 | |
| 2 | 6B19|1|C+ 6B19|1|D | Architecture of HIV-1 reverse transcriptase initiation complex core | ELECTRON MICROSCOPY | 4.5 | 19 | |
| 3 | 6WB2|1|D | +3 extended HIV-1 reverse transcriptase initiation complex core (displaced state) | ELECTRON MICROSCOPY | 4.5 | 38 | |
| 4 | 6WB0|1|D+ 6WB0|1|C | +3 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state) | ELECTRON MICROSCOPY | 4.2 | 38 | |
| 5 | 7K1Z|9|A | Solution structure of the HIV-1 PBS-segment | SOLUTION SCATTERING, SOLUTION NMR | 103 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: