Equivalence class NR_all_33048.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8P8B|1|7 (rep) | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells | Electron microscopy | 2.9 | 2024-11-20 |
| 2 | 8P7X|1|7 | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells | Electron microscopy | 3.03 | 2024-11-20 |
| 3 | 8P7Y|1|7 | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit | Electron microscopy | 3.7 | 2024-11-20 |
| 4 | 8P6P|1|7 | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells | Electron microscopy | 3.2 | 2024-11-20 |
| 5 | 8P8V|1|7 | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S) | Electron microscopy | 8.7 | 2024-11-20 |
| 6 | 8P8W|1|7 | Transfer RNA | tRNA-Asp (P-site) | Mycoplasmoides pneumoniae M129 | Bacteria | RF00005 | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S) | Electron microscopy | 8.7 | 2024-11-20 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8P8B|1|7 | Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells | ELECTRON MICROSCOPY | 2.9 | 75 | |
| 2 | 8P7X|1|7 | Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells | ELECTRON MICROSCOPY | 3.03 | 75 | |
| 3 | 8P7Y|1|7 | Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit | ELECTRON MICROSCOPY | 3.7 | 75 | |
| 4 | 8P8W|1|7 | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S) | ELECTRON MICROSCOPY | 8.7 | 75 | |
| 5 | 8P8V|1|7 | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S) | ELECTRON MICROSCOPY | 8.7 | 75 | |
| 6 | 8P6P|1|7 | Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells | ELECTRON MICROSCOPY | 3.2 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: