Equivalence class NR_all_33592.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2TMV|1|R (rep) | RNA (5'-R(P*GP*AP*A)-3') | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1989-01-09 | ||||
| 2 | 1RMV|1|B | RIBGRASS MOSAIC VIRUS RNA | Ribgrass mosaic virus | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1997-05-15 | |||
| 3 | 1CGM|1|I | RNA (5'-R(P*GP*AP*A)-3') | STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | Fiber diffraction | 3.4 | 1994-04-30 | ||||
| 4 | 1VTM|1|R | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mild green mosaic virus | STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION | Fiber diffraction | 3.5 | 1994-07-31 | |||
| 5 | 4UDV|1|R | 5'-D(*GP*AP*AP)-3' | Tobacco mosaic virus | Cryo-EM structure of TMV at 3.35 A resolution | Electron microscopy | 3.35 | 2014-12-31 | |||
| 6 | 2OM3|1|R | Tobacco Mosaic Virus RNA | High-resolution cryo-EM structure of Tobacco Mosaic Virus | Electron microscopy | 4.4 | 2007-10-16 | ||||
| 7 | 3PDM|1|R | RNA (5'-R(P*GP*AP*A)-3') | Hibiscus Latent Singapore virus | Fiber diffraction | 3.5 | 2011-01-12 | ||||
| 8 | 2XEA|1|R | 5'-(*GP*AP*AP)-3' | Tobacco mosaic virus | 4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA | Electron microscopy | 4.6 | 2010-06-30 |
Release history
| Release | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_33592.2 | NR_20.0_33592.3 | 2.39 | (8) 1CGM|1|I, 1RMV|1|B, 1VTM|1|R, 2OM3|1|R, 2TMV|1|R, 2XEA|1|R, 3PDM|1|R, 4UDV|1|R | (0) | (2) 5A79|1|R, 5A7A|1|R |
| NR_all_33592.2 | NR_3.0_33592.3 | 2.39 | (2) 1RMV|1|B, 2TMV|1|R | (6) 1CGM|1|I, 1VTM|1|R, 2OM3|1|R, 2XEA|1|R, 3PDM|1|R, 4UDV|1|R | (0) |
| NR_all_33592.2 | NR_3.5_33592.3 | 2.39 | (6) 1CGM|1|I, 1RMV|1|B, 1VTM|1|R, 2TMV|1|R, 3PDM|1|R, 4UDV|1|R | (2) 2OM3|1|R, 2XEA|1|R | (0) |
| NR_all_33592.2 | NR_4.0_33592.3 | 2.39 | (6) 1CGM|1|I, 1RMV|1|B, 1VTM|1|R, 2TMV|1|R, 3PDM|1|R, 4UDV|1|R | (2) 2OM3|1|R, 2XEA|1|R | (0) |
| NR_all_33592.2 | NR_all_33592.3 | 2.39 | (8) 1CGM|1|I, 1RMV|1|B, 1VTM|1|R, 2OM3|1|R, 2TMV|1|R, 2XEA|1|R, 3PDM|1|R, 4UDV|1|R | (0) | (2) 5A79|1|R, 5A7A|1|R |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3PDM|1|R | Hibiscus Latent Singapore virus | FIBER DIFFRACTION | 3.5 | 3 | |
| 2 | 1RMV|1|B | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 | |
| 3 | 1VTM|1|R | STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 3.5 | 3 | |
| 4 | 1CGM|1|I | STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | FIBER DIFFRACTION | 3.4 | 3 | |
| 5 | 2TMV|1|R | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 | |
| 6 | 2XEA|1|R | 4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA | ELECTRON MICROSCOPY | 4.6 | 3 | |
| 7 | 2OM3|1|R | High-resolution cryo-EM structure of Tobacco Mosaic Virus | ELECTRON MICROSCOPY | 4.4 | 3 | |
| 8 | 4UDV|1|R | Cryo-EM structure of TMV at 3.35 A resolution | ELECTRON MICROSCOPY | 3.35 | 3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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