#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-ray diffraction2.92006-12-12
22NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-ray diffraction3.62006-12-19
32E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-ray diffraction3.412006-12-19
42E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-ray diffraction3.952006-12-12
52NVZ|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II elongation complex with UTP, updated 11/2006X-ray diffraction4.32006-12-19
61SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-ray diffraction3.612004-03-02
71R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-ray diffraction3.52004-11-16
82YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-ray diffraction3.42007-04-24
91R9S|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-ray diffraction4.252004-11-16
105VVR|1|RRNASaccharomyces cerevisiaeTernary complex of RNA Pol II, transcription scaffold and Rad26Electron microscopy5.82017-11-22
115VVS|1|RRNASaccharomyces cerevisiaeRNA pol II elongation complexElectron microscopy6.42017-11-22

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.36
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_34359.2NR_all_34359.13.0(9) 1R9S|1|R, 1R9T|1|R, 1SFO|1|R, 2E2H|1|R, 2E2I|1|R, 2NVQ|1|R, 2NVX|1|R, 2NVZ|1|R, 2YU9|1|R(2) 5VVR|1|R, 5VVS|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_34359.2NR_all_34359.33.37(11) 1R9S|1|R, 1R9T|1|R, 1SFO|1|R, 2E2H|1|R, 2E2I|1|R, 2NVQ|1|R, 2NVX|1|R, 2NVZ|1|R, 2YU9|1|R, 5VVR|1|R, 5VVS|1|R(0) (2) 6H67|1|R, 6H68|1|R

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11R9S|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.2510
21R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
31SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
42NVZ|1|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.310
52E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
62NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
72E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
82YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
92NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
105VVR|1|RTernary complex of RNA Pol II, transcription scaffold and Rad26ELECTRON MICROSCOPY5.810
115VVS|1|RRNA pol II elongation complexELECTRON MICROSCOPY6.410

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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