Equivalence class NR_all_35010.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8G7R|1|w (rep) | Transfer RNA | Isoleucine tRNA, M-I mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) | Electron microscopy | 2.8 | 76 | 2024-03-06 |
| 2 | 8HSP|1|X | Transfer RNA | A-site tRNA_Ile2, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | Electron microscopy | 2.32 | 76 | 2024-04-03 |
| 3 | 8G7S|1|x | Transfer RNA | I-F mRNA, Isoleucine tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) | Electron microscopy | 3.1 | 76 | 2024-03-06 |
| 4 | 8G7S|1|y | Transfer RNA | I-F mRNA, Isoleucine tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) | Electron microscopy | 3.1 | 76 | 2024-03-06 |
| 5 | 8HU1|1|X | Transfer RNA | A-site tRNA_Ile2, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state | Electron microscopy | 2.69 | 76 | 2024-04-03 |
| 6 | 8G7P|1|y | Transfer RNA | Isoleucine tRNA, M-I mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) | Electron microscopy | 2.9 | 76 | 2024-03-06 |
| 7 | 8G7R|1|y | Transfer RNA | Isoleucine tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) | Electron microscopy | 2.8 | 76 | 2024-03-06 |
| 8 | 9YLU|1|J | Transfer RNA | tRNA Ile CAU | Escherichia coli BL21(DE3) | Bacteria | RF00005 | cryoEM structure of CbCash filament with cA4 and tRNA Ile CAU | Electron microscopy | 2.65 | 17 | 2026-04-29 |
| 9 | 8G7Q|1|y | Transfer RNA | Isoleucine tRNA, M-M mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) | Electron microscopy | 3.1 | 76 | 2024-03-06 |
| 10 | 8AKN|1|Z | Transfer RNA | Isoleucine-tRNA, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | Electron microscopy | 2.3 | 76 | 2023-03-08 |
| 11 | 8R6C|1|Y | Transfer RNA | Isoeucine-tRNA | Escherichia coli BW25113 | Bacteria | RF00005 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. | Electron microscopy | 2.2 | 73 | 2024-07-24 |
| 12 | 8R8M|1|Y | Transfer RNA | Isoleucine-tRNA | Escherichia coli BW25113 | Bacteria | RF00005 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. | Electron microscopy | 2.4 | 73 | 2024-07-24 |
Release history
| Release | 4.37 |
|---|---|
| Date | 2026-04-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8G7S|1|y | Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 2 | 8G7Q|1|y | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 3 | 8G7P|1|y | Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) | ELECTRON MICROSCOPY | 2.9 | 76 | |
| 4 | 8G7R|1|y | Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) | ELECTRON MICROSCOPY | 2.8 | 76 | |
| 5 | 8G7S|1|x | Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 6 | 8G7R|1|w | Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) | ELECTRON MICROSCOPY | 2.8 | 76 | |
| 7 | 8HSP|1|X | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | ELECTRON MICROSCOPY | 2.32 | 76 | |
| 8 | 8HU1|1|X | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state | ELECTRON MICROSCOPY | 2.69 | 76 | |
| 9 | 8R6C|1|Y | 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. | ELECTRON MICROSCOPY | 2.2 | 73 | |
| 10 | 8R8M|1|Y | 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. | ELECTRON MICROSCOPY | 2.4 | 73 | |
| 11 | 9YLU|1|J | cryoEM structure of CbCash filament with cA4 and tRNA Ile CAU | ELECTRON MICROSCOPY | 2.65 | 17 | |
| 12 | 8AKN|1|Z | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | ELECTRON MICROSCOPY | 2.3 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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