RNA 3D Hub //

Equivalence class NR_all_36270.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12PWT|1|A+ 2PWT|1|B (rep)22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-ray diffraction1.82007-09-18
22F4S|1|A+ 2F4S|1|B5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'A-site RNA in complex with neamineX-ray diffraction2.82006-05-02
33BNN|1|A+ 3BNN|1|BA site of human ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-ray diffraction22008-06-24
43S4P|1|A+ 3S4P|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-ray diffraction2.562011-09-21
54F8V|1|A+ 4F8V|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-ray diffraction2.82012-08-15
62F4U|1|A+ 2F4U|1|B5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-ray diffraction2.62006-05-02
73BNN|1|C+ 3BNN|1|DA site of human ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-ray diffraction22008-06-24
83BNO|1|A+ 3BNO|1|BA site of human mitochondrial ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-ray diffraction2.352008-06-24
93BNO|1|C+ 3BNO|1|DA site of human mitochondrial ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-ray diffraction2.352008-06-24

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_36270.1NR_all_46403.12.93(4) 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D(5) 2F4S|1|A+2F4S|1|B, 2F4U|1|A+2F4U|1|B, 2PWT|1|A+2PWT|1|B, 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B(1) 3BNP|1|A+3BNP|1|B
NR_all_36270.1NR_all_52295.12.93(1) 2F4U|1|A+2F4U|1|B(8) 2F4S|1|A+2F4S|1|B, 2PWT|1|A+2PWT|1|B, 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D, 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B(2) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B
NR_all_36270.1NR_all_82951.12.93(1) 2F4S|1|A+2F4S|1|B(8) 2F4U|1|A+2F4U|1|B, 2PWT|1|A+2PWT|1|B, 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D, 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B(1) 2O3X|1|A+2O3X|1|B
NR_all_36270.1NR_all_97151.12.93(3) 2PWT|1|A+2PWT|1|B, 3S4P|1|A+3S4P|1|B, 4F8V|1|A+4F8V|1|B(6) 2F4S|1|A+2F4S|1|B, 2F4U|1|A+2F4U|1|B, 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D(31) 1J7T|1|A+1J7T|1|B, 1LC4|1|A+1LC4|1|B, 1MWL|1|A+1MWL|1|B, 1YRJ|1|A+1YRJ|1|B, 2BE0|1|A+2BE0|1|B, 2BEE|1|A+2BEE|1|B, 2ESI|1|A+2ESI|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET3|1|A+2ET3|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 2F4T|1|B+2F4T|1|A, 3BNL|1|A+3BNL|1|B, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4F8U|1|A+4F8U|1|B, 4GPW|1|A+4GPW|1|B, 4GPX|1|A+4GPX|1|B, 4GPY|1|A+4GPY|1|B, 4K32|1|A+4K32|1|B, 4P20|1|A+4P20|1|B, 4P3S|1|B+4P3S|1|A, 4PDQ|1|A+4PDQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B, 4WCR|1|A+4WCR|1|B, 4WCS|1|A+4WCS|1|B, 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 5BXK|1|C+5BXK|1|D

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13BNO|1|C+ 3BNO|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.3520
23BNN|1|C+ 3BNN|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION221
33BNO|1|A+ 3BNO|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.3520
43BNN|1|A+ 3BNN|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION221
54F8V|1|A+ 4F8V|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
62PWT|1|A+ 2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
73S4P|1|A+ 3S4P|1|BCrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
82F4U|1|A+ 2F4U|1|BAsite RNA + designer antibioticX-RAY DIFFRACTION2.621
92F4S|1|A+ 2F4S|1|BA-site RNA in complex with neamineX-RAY DIFFRACTION2.821

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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