RNA 3D Hub //

Equivalence class NR_all_37091.1 Obsolete

Showing 1 to 7 of 7 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13HOY|1|P (rep)5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3'Complete RNA polymerase II elongation complex VIX-ray diffraction3.4102009-07-28
28HIM|1|PRNA (5'-R(*UP*AP*UP*AP*UP*GP*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3')Brassica oleraceaA cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 AngstromElectron microscopy2.8112023-03-22
36HLR|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)Electron microscopy3.1892019-04-03
46HLQ|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.1892019-04-03
55M5X|1|RRNASaccharomyces cerevisiaeRNA Polymerase I elongation complex 1Electron microscopy4132016-12-21
66HKO|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPElectron microscopy3.4292019-04-03
75M3F|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex at 3.8AElectron microscopy3.882016-11-23

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 7 of 7 entries
#SViewPDBTitleMethodResolution#NTs
15M5X|1|RRNA Polymerase I elongation complex 1ELECTRON MICROSCOPY413
25M3F|1|RYeast RNA polymerase I elongation complex at 3.8AELECTRON MICROSCOPY3.88
36HLQ|1|RYeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.189
46HLR|1|RYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)ELECTRON MICROSCOPY3.189
56HKO|1|RYeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPPELECTRON MICROSCOPY3.429
68HIM|1|PA cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 AngstromELECTRON MICROSCOPY2.811
73HOY|1|PComplete RNA polymerase II elongation complex VIX-RAY DIFFRACTION3.410

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

5M5X|1|R:5M5X|1|R = 05M5X|1|R:5M3F|1|R = 0.21705M5X|1|R:6HLQ|1|R = 0.32815M5X|1|R:6HLR|1|R = 0.29775M5X|1|R:6HKO|1|R = 0.32395M5X|1|R:8HIM|1|P = 0.83625M5X|1|R:3HOY|1|P = 0.93945M3F|1|R:5M5X|1|R = 0.21705M3F|1|R:5M3F|1|R = 05M3F|1|R:6HLQ|1|R = 0.25215M3F|1|R:6HLR|1|R = 0.24505M3F|1|R:6HKO|1|R = 0.29995M3F|1|R:8HIM|1|P = 0.35015M3F|1|R:3HOY|1|P = 0.41136HLQ|1|R:5M5X|1|R = 0.32816HLQ|1|R:5M3F|1|R = 0.25216HLQ|1|R:6HLQ|1|R = 06HLQ|1|R:6HLR|1|R = 0.14646HLQ|1|R:6HKO|1|R = 0.17576HLQ|1|R:8HIM|1|P = 0.36026HLQ|1|R:3HOY|1|P = 0.40926HLR|1|R:5M5X|1|R = 0.29776HLR|1|R:5M3F|1|R = 0.24506HLR|1|R:6HLQ|1|R = 0.14646HLR|1|R:6HLR|1|R = 06HLR|1|R:6HKO|1|R = 0.11046HLR|1|R:8HIM|1|P = 0.30406HLR|1|R:3HOY|1|P = 0.34736HKO|1|R:5M5X|1|R = 0.32396HKO|1|R:5M3F|1|R = 0.29996HKO|1|R:6HLQ|1|R = 0.17576HKO|1|R:6HLR|1|R = 0.11046HKO|1|R:6HKO|1|R = 06HKO|1|R:8HIM|1|P = 0.30586HKO|1|R:3HOY|1|P = 0.35048HIM|1|P:5M5X|1|R = 0.83628HIM|1|P:5M3F|1|R = 0.35018HIM|1|P:6HLQ|1|R = 0.36028HIM|1|P:6HLR|1|R = 0.30408HIM|1|P:6HKO|1|R = 0.30588HIM|1|P:8HIM|1|P = 08HIM|1|P:3HOY|1|P = 0.28753HOY|1|P:5M5X|1|R = 0.93943HOY|1|P:5M3F|1|R = 0.41133HOY|1|P:6HLQ|1|R = 0.40923HOY|1|P:6HLR|1|R = 0.34733HOY|1|P:6HKO|1|R = 0.35043HOY|1|P:8HIM|1|P = 0.28753HOY|1|P:3HOY|1|P = 05M5X|1|R5M3F|1|R6HLQ|1|R6HLR|1|R6HKO|1|R8HIM|1|P3HOY|1|PDiscrepancy0.000.200.400.600.80

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