Equivalence class NR_all_38698.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5UZ6|1|A+ 5UZ6|1|B (rep) | RNA (25-MER), RNA (5'-D(*(8OS))-R(P*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImp-oligo analogue | X-ray diffraction | 2.1 | 33 | 2018-02-21 | |||
| 2 | 5UZ6|1|C+ 5UZ6|1|D | RNA (25-MER), RNA (5'-D(*(8OS))-R(P*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImp-oligo analogue | X-ray diffraction | 2.1 | 33 | 2018-02-21 | |||
| 3 | 5UZ6|1|E+ 5UZ6|1|F | RNA (25-MER), RNA (5'-D(*(8OS))-R(P*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImp-oligo analogue | X-ray diffraction | 2.1 | 33 | 2018-02-21 | |||
| 4 | 6BMD|1|C+ 6BMD|1|D | RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3') | synthetic construct | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-ray diffraction | 3 | 32 | 2018-02-21 | |||
| 5 | 6BMD|1|A+ 6BMD|1|B | RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3') | synthetic construct | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-ray diffraction | 3 | 32 | 2018-02-21 | |||
| 6 | 5V9Z|1|A+ 5V9Z|1|B | RNA (25-MER), RNA (5'-R(P*GP*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImpG analogue bound | X-ray diffraction | 2.51 | 33 | 2018-02-21 | |||
| 7 | 6BMD|1|E+ 6BMD|1|F | RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3') | synthetic construct | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-ray diffraction | 3 | 32 | 2018-02-21 | |||
| 8 | 5UX3|1|A+ 5UX3|1|B | RNA (25-MER), RNA (5'-D(*(RG))-R(P*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue | X-ray diffraction | 2.5 | 33 | 2018-02-21 | |||
| 9 | 5V0O|1|A+ 5V0O|1|B | RNA (25-MER), RNA (5'-R(*GP*CP*AP*CP*CP*UP*CP*A)-3') | synthetic construct | RNA hairpin structure containing 2-MeImpG analogue bound | X-ray diffraction | 2.7 | 33 | 2018-02-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5UZ6|1|E+ 5UZ6|1|F | RNA hairpin structure containing 2-MeImp-oligo analogue | X-RAY DIFFRACTION | 2.1 | 33 | |
| 2 | 6BMD|1|E+ 6BMD|1|F | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-RAY DIFFRACTION | 3 | 32 | |
| 3 | 6BMD|1|C+ 6BMD|1|D | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-RAY DIFFRACTION | 3 | 32 | |
| 4 | 5UZ6|1|C+ 5UZ6|1|D | RNA hairpin structure containing 2-MeImp-oligo analogue | X-RAY DIFFRACTION | 2.1 | 33 | |
| 5 | 5V0O|1|A+ 5V0O|1|B | RNA hairpin structure containing 2-MeImpG analogue bound | X-RAY DIFFRACTION | 2.7 | 33 | |
| 6 | 5UZ6|1|A+ 5UZ6|1|B | RNA hairpin structure containing 2-MeImp-oligo analogue | X-RAY DIFFRACTION | 2.1 | 33 | |
| 7 | 6BMD|1|A+ 6BMD|1|B | RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper | X-RAY DIFFRACTION | 3 | 32 | |
| 8 | 5V9Z|1|A+ 5V9Z|1|B | RNA hairpin structure containing 2-MeImpG analogue bound | X-RAY DIFFRACTION | 2.51 | 33 | |
| 9 | 5UX3|1|A+ 5UX3|1|B | RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue | X-RAY DIFFRACTION | 2.5 | 33 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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