Equivalence class NR_all_39156.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GWK|1|J+ 8GWK|1|I (rep) | primer, template | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 RNA E-RTC complex with RMP-nsp9 and GMPPNP | Electron microscopy | 2.72 | 51 | 2024-02-28 | |||
| 2 | 8GWM|1|J+ 8GWM|1|I | RNA (25-MER), RNA (26-MER) | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 E-RTC bound with MMP-nsp9 and GMPPNP | Electron microscopy | 2.64 | 51 | 2024-02-28 | |||
| 3 | 9UHT|1|J+ 9UHT|1|I | PRIMER, TEMPLATE | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 E-RTC in complex with RNA-nsp9 and GMPPNP | Electron microscopy | 2.89 | 52 | 2025-06-11 | |||
| 4 | 8GW1|1|J+ 8GW1|1|I | RNA (25-MER), Template | Severe acute respiratory syndrome coronavirus 2 | A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors | Electron microscopy | 3.31 | 51 | 2023-10-25 | |||
| 5 | 7EIZ|1|J+ 7EIZ|1|I | primer, template | Severe acute respiratory syndrome coronavirus 2 | Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading | Electron microscopy | 52 | 2021-09-22 |
Release history
| Release | 3.391 |
|---|---|
| Date | 2025-06-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9UHT|1|J+ 9UHT|1|I | SARS-CoV-2 E-RTC in complex with RNA-nsp9 and GMPPNP | ELECTRON MICROSCOPY | 2.89 | 52 | |
| 2 | 8GWK|1|J+ 8GWK|1|I | SARS-CoV-2 RNA E-RTC complex with RMP-nsp9 and GMPPNP | ELECTRON MICROSCOPY | 2.72 | 51 | |
| 3 | 8GWM|1|J+ 8GWM|1|I | SARS-CoV-2 E-RTC bound with MMP-nsp9 and GMPPNP | ELECTRON MICROSCOPY | 2.64 | 51 | |
| 4 | 8GW1|1|J+ 8GW1|1|I | A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors | ELECTRON MICROSCOPY | 3.31 | 51 | |
| 5 | 7EIZ|1|J+ 7EIZ|1|I | Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading | ELECTRON MICROSCOPY | 52 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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