RNA 3D Hub //

Equivalence class NR_all_41012.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16RR7|1|D+ 6RR7|1|E (rep)RNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*C)-3'), RNA (5'-R(P*GP*CP*CP*UP*GP*CP*UP*UP*UP*UP*G)-3')Influenza A virusInfluenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primerElectron microscopy3.01252019-09-04
28R60|1|D+ 8R60|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptideElectron microscopy3.23152024-03-27
37NHX|1|F+ 7NHX|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)Electron microscopy3.23152021-12-01
47NI0|1|D+ 7NI0|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)Electron microscopy3.32152021-12-01
57NK1|1|D+ 7NK1|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 Influenza virus polymerase heterotirmer in complex with vRNA promoters and Nb8201Electron microscopy4.22152021-12-01
68R65|1|D+ 8R65|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide with ordered PB2 C-terminal domainsElectron microscopy4.23152024-03-27
77NJ3|1|D+ 7NJ3|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8196 coreElectron microscopy4.48152021-12-01
87NJ5|1|D+ 7NJ5|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8199 coreElectron microscopy4.63152021-12-01
97NKI|1|D+ 7NKI|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8209 coreElectron microscopy4.67152021-12-01
107NJ7|1|D+ 7NJ7|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8200 coreElectron microscopy4.82152021-12-01
117NK2|1|D+ 7NK2|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8202 coreElectron microscopy4.84152021-12-01
127NIL|1|D+ 7NIL|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8190 coreElectron microscopy5.01152021-12-01
137NK4|1|D+ 7NK4|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8203 coreElectron microscopy5.32152021-12-01
147NJ4|1|D+ 7NJ4|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8198 coreElectron microscopy5.84152021-12-01
157NIS|1|D+ 7NIS|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8192 coreElectron microscopy5.96152021-12-01
167NIK|1|D+ 7NIK|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8189 coreElectron microscopy6.2152021-12-01
177NIR|1|D+ 7NIR|1|ERNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*CP*C)-3'), RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8191 coreElectron microscopy6.7152021-12-01

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17NI0|1|D+ 7NI0|1|E1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)ELECTRON MICROSCOPY3.3215
27NHX|1|F+ 7NHX|1|E1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)ELECTRON MICROSCOPY3.2315
37NJ4|1|D+ 7NJ4|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8198 coreELECTRON MICROSCOPY5.8415
47NKI|1|D+ 7NKI|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8209 coreELECTRON MICROSCOPY4.6715
57NK4|1|D+ 7NK4|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8203 coreELECTRON MICROSCOPY5.3215
67NJ5|1|D+ 7NJ5|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8199 coreELECTRON MICROSCOPY4.6315
77NIR|1|D+ 7NIR|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8191 coreELECTRON MICROSCOPY6.715
87NJ3|1|D+ 7NJ3|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8196 coreELECTRON MICROSCOPY4.4815
97NK1|1|D+ 7NK1|1|E1918 Influenza virus polymerase heterotirmer in complex with vRNA promoters and Nb8201ELECTRON MICROSCOPY4.2215
107NIL|1|D+ 7NIL|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8190 coreELECTRON MICROSCOPY5.0115
117NIS|1|D+ 7NIS|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8192 coreELECTRON MICROSCOPY5.9615
127NIK|1|D+ 7NIK|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8189 coreELECTRON MICROSCOPY6.215
137NJ7|1|D+ 7NJ7|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8200 coreELECTRON MICROSCOPY4.8215
147NK2|1|D+ 7NK2|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8202 coreELECTRON MICROSCOPY4.8415
156RR7|1|D+ 6RR7|1|EInfluenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primerELECTRON MICROSCOPY3.0125
168R65|1|D+ 8R65|1|E1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide with ordered PB2 C-terminal domainsELECTRON MICROSCOPY4.2315
178R60|1|D+ 8R60|1|E1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptideELECTRON MICROSCOPY3.2315

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0118 s