RNA 3D Hub //

Equivalence class NR_all_41668.1 Obsolete

Showing 1 to 9 of 9 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14LJ0|1|C (rep)polyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1542013-10-09
24LJ0|1|Dpolyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1542013-10-09
34LJ0|1|Epolyadenosine RNANab2 Zn fingers complexed with polyadenosineX-ray diffraction2.1522013-10-09
47M50|1|TT+ 7M50|1|kkRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-ray diffraction2.31132021-12-15
55BKN|1|PRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction372021-12-15
65BKN|1|S+ 5BKN|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction3122021-12-15
75BKN|1|aRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-ray diffraction342021-12-15
87OGK|1|D3'ETS(LeuZ)Escherichia coliA cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ)Electron microscopy3.482021-07-07
95LZY|1|hhmRNA (polyadenylated)Oryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.9982016-11-30

Release history

Release3.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.269
Date2021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_41668.1NR_all_80093.33.209(5) 4LJ0|1|C, 4LJ0|1|D, 4LJ0|1|E, 5LZY|1|hh, 7OGK|1|D(4) 5BKN|1|a, 5BKN|1|P, 5BKN|1|S+5BKN|1|h, 7M50|1|TT+7M50|1|kk(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_41668.1NR_all_41668.23.270(9) 4LJ0|1|C, 4LJ0|1|D, 4LJ0|1|E, 5BKN|1|a, 5BKN|1|P, 5BKN|1|S+5BKN|1|h, 5LZY|1|hh, 7M50|1|TT+7M50|1|kk, 7OGK|1|D(0) (1) 8CX0|1|K

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 9 of 9 entries
#SViewPDBTitleMethodResolution#NTs
15BKN|1|aCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION34
24LJ0|1|ENab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.152
34LJ0|1|CNab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.154
44LJ0|1|DNab2 Zn fingers complexed with polyadenosineX-RAY DIFFRACTION2.154
55LZY|1|hhStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.998
67OGK|1|DA cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ)ELECTRON MICROSCOPY3.48
75BKN|1|S+ 5BKN|1|hCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION312
85BKN|1|PCrystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chlorideX-RAY DIFFRACTION37
97M50|1|TT+ 7M50|1|kkCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-RAY DIFFRACTION2.3113

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

5BKN|1|a:5BKN|1|a = 05BKN|1|a:4LJ0|1|E not available5BKN|1|a:4LJ0|1|C = 1.88175BKN|1|a:4LJ0|1|D = 1.84975BKN|1|a:5LZY|1|hh = 1.80745BKN|1|a:7OGK|1|D = 1.34945BKN|1|a:5BKN|1|S+5BKN|1|h = 1.49565BKN|1|a:5BKN|1|P = 1.37395BKN|1|a:7M50|1|TT+7M50|1|kk not available4LJ0|1|E:5BKN|1|a not available4LJ0|1|E:4LJ0|1|E = 04LJ0|1|E:4LJ0|1|C = 1.99214LJ0|1|E:4LJ0|1|D = 2.02754LJ0|1|E:5LZY|1|hh not available4LJ0|1|E:7OGK|1|D not available4LJ0|1|E:5BKN|1|S+5BKN|1|h not available4LJ0|1|E:5BKN|1|P not available4LJ0|1|E:7M50|1|TT+7M50|1|kk not available4LJ0|1|C:5BKN|1|a = 1.88174LJ0|1|C:4LJ0|1|E = 1.99214LJ0|1|C:4LJ0|1|C = 04LJ0|1|C:4LJ0|1|D = 0.44854LJ0|1|C:5LZY|1|hh = 2.52254LJ0|1|C:7OGK|1|D = 2.55314LJ0|1|C:5BKN|1|S+5BKN|1|h = 1.98084LJ0|1|C:5BKN|1|P = 1.99634LJ0|1|C:7M50|1|TT+7M50|1|kk not available4LJ0|1|D:5BKN|1|a = 1.84974LJ0|1|D:4LJ0|1|E = 2.02754LJ0|1|D:4LJ0|1|C = 0.44854LJ0|1|D:4LJ0|1|D = 04LJ0|1|D:5LZY|1|hh = 2.32664LJ0|1|D:7OGK|1|D = 2.50964LJ0|1|D:5BKN|1|S+5BKN|1|h = 2.02894LJ0|1|D:5BKN|1|P = 2.04584LJ0|1|D:7M50|1|TT+7M50|1|kk not available5LZY|1|hh:5BKN|1|a = 1.80745LZY|1|hh:4LJ0|1|E not available5LZY|1|hh:4LJ0|1|C = 2.52255LZY|1|hh:4LJ0|1|D = 2.32665LZY|1|hh:5LZY|1|hh = 05LZY|1|hh:7OGK|1|D = 2.12555LZY|1|hh:5BKN|1|S+5BKN|1|h = 2.02925LZY|1|hh:5BKN|1|P = 2.00205LZY|1|hh:7M50|1|TT+7M50|1|kk not available7OGK|1|D:5BKN|1|a = 1.34947OGK|1|D:4LJ0|1|E not available7OGK|1|D:4LJ0|1|C = 2.55317OGK|1|D:4LJ0|1|D = 2.50967OGK|1|D:5LZY|1|hh = 2.12557OGK|1|D:7OGK|1|D = 07OGK|1|D:5BKN|1|S+5BKN|1|h = 2.36167OGK|1|D:5BKN|1|P = 2.18217OGK|1|D:7M50|1|TT+7M50|1|kk not available5BKN|1|S+5BKN|1|h:5BKN|1|a = 1.49565BKN|1|S+5BKN|1|h:4LJ0|1|E not available5BKN|1|S+5BKN|1|h:4LJ0|1|C = 1.98085BKN|1|S+5BKN|1|h:4LJ0|1|D = 2.02895BKN|1|S+5BKN|1|h:5LZY|1|hh = 2.02925BKN|1|S+5BKN|1|h:7OGK|1|D = 2.36165BKN|1|S+5BKN|1|h:5BKN|1|S+5BKN|1|h = 05BKN|1|S+5BKN|1|h:5BKN|1|P = 0.74695BKN|1|S+5BKN|1|h:7M50|1|TT+7M50|1|kk not available5BKN|1|P:5BKN|1|a = 1.37395BKN|1|P:4LJ0|1|E not available5BKN|1|P:4LJ0|1|C = 1.99635BKN|1|P:4LJ0|1|D = 2.04585BKN|1|P:5LZY|1|hh = 2.00205BKN|1|P:7OGK|1|D = 2.18215BKN|1|P:5BKN|1|S+5BKN|1|h = 0.74695BKN|1|P:5BKN|1|P = 05BKN|1|P:7M50|1|TT+7M50|1|kk not available7M50|1|TT+7M50|1|kk:5BKN|1|a not available7M50|1|TT+7M50|1|kk:4LJ0|1|E not available7M50|1|TT+7M50|1|kk:4LJ0|1|C not available7M50|1|TT+7M50|1|kk:4LJ0|1|D not available7M50|1|TT+7M50|1|kk:5LZY|1|hh not available7M50|1|TT+7M50|1|kk:7OGK|1|D not available7M50|1|TT+7M50|1|kk:5BKN|1|S+5BKN|1|h not available7M50|1|TT+7M50|1|kk:5BKN|1|P not available7M50|1|TT+7M50|1|kk:7M50|1|TT+7M50|1|kk = 05BKN|1|a4LJ0|1|E4LJ0|1|C4LJ0|1|D5LZY|1|hh7OGK|1|D5BKN|1|S+5BKN|1|h5BKN|1|P7M50|1|TT+7M50|1|kkDiscrepancy0.000.501.001.502.002.50

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