Equivalence class NR_all_41668.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8CX0|1|K (rep) | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Spodoptera frugiperda | Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex | Electron microscopy | 2.7 | 8 | 2023-02-15 | |||
| 2 | 4LJ0|1|C | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 4 | 2013-10-09 | ||||
| 3 | 9Q3F|1|B | Non-homogenous guide RNA | Trichoplusia ni | Structure of neurodevelopmental mutant AGO1 F180del in complex with guide RNA | Electron microscopy | 3.3 | 8 | 2025-11-05 | |||
| 4 | 4LJ0|1|D | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 4 | 2013-10-09 | ||||
| 5 | 4LJ0|1|E | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2 | 2013-10-09 | ||||
| 6 | 7M50|1|V | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 7 | 2021-12-15 | |||
| 7 | 7M50|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 7 | 2021-12-15 | |||
| 8 | 7M50|1|TT+ 7M50|1|kk | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 13 | 2021-12-15 | |||
| 9 | 5BKN|1|S+ 5BKN|1|h | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 12 | 2021-12-15 | |||
| 10 | 9TRD|1|M+ 9TRD|1|N | RNA | synthetic construct | Bacterial antiviral defense protein PD-T7-3 (H122A) in complex with single-stranded DNA and a fragment of RNA | Electron microscopy | 3.38 | 16 | 2026-09-16 | |||
| 11 | 5BKN|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 7 | 2021-12-15 | |||
| 12 | 5BKN|1|a | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 4 | 2021-12-15 | |||
| 13 | 7OGK|1|D | 3'ETS(LeuZ) | Escherichia coli | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | Electron microscopy | 3.4 | 8 | 2021-07-07 | |||
| 14 | 5LZY|1|hh | mRNA (polyadenylated) | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 8 | 2016-11-30 |
Release history
| Release | 4.57 |
|---|---|
| Date | 2026-09-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4LJ0|1|E | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 2 | |
| 2 | 4LJ0|1|C | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 | |
| 3 | 4LJ0|1|D | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 | |
| 4 | 9Q3F|1|B | Structure of neurodevelopmental mutant AGO1 F180del in complex with guide RNA | ELECTRON MICROSCOPY | 3.3 | 8 | |
| 5 | 9TRD|1|M+ 9TRD|1|N | Bacterial antiviral defense protein PD-T7-3 (H122A) in complex with single-stranded DNA and a fragment of RNA | ELECTRON MICROSCOPY | 3.38 | 16 | |
| 6 | 5BKN|1|P | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 7 | |
| 7 | 7M50|1|P | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 7 | |
| 8 | 5BKN|1|S+ 5BKN|1|h | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 12 | |
| 9 | 8CX0|1|K | Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex | ELECTRON MICROSCOPY | 2.7 | 8 | |
| 10 | 5BKN|1|a | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 4 | |
| 11 | 7OGK|1|D | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | ELECTRON MICROSCOPY | 3.4 | 8 | |
| 12 | 5LZY|1|hh | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 8 | |
| 13 | 7M50|1|V | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 7 | |
| 14 | 7M50|1|TT+ 7M50|1|kk | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 13 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: