Equivalence class NR_all_41742.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8FR8|1|B (rep) | 5S ribosomal RNA | 5S rRNA (118-MER) | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | Electron microscopy | 2.76 | 2023-05-17 |
| 2 | 7KGB|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | Electron microscopy | 2.7 | 2022-01-19 |
| 3 | 7MT7|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P and E site tRNAs | Electron microscopy | 2.71 | 2022-02-02 |
| 4 | 7MT2|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S initiation complex | Electron microscopy | 2.76 | 2022-02-02 |
| 5 | 7MSM|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | Electron microscopy | 2.79 | 2022-02-02 |
| 6 | 7MT3|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P/E tRNA | Electron microscopy | 2.8 | 2022-02-02 |
| 7 | 7S0S|1|i | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | Electron microscopy | 3.05 | 2022-03-30 |
| 8 | 7MSC|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | Electron microscopy | 2.97 | 2022-02-02 |
| 9 | 5XYM|1|B | 5S ribosomal RNA | 5S RNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Large subunit of Mycobacterium smegmatis | Electron microscopy | 3.08 | 2017-09-27 |
| 10 | 7MSZ|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | Electron microscopy | 3.1 | 2022-02-02 |
| 11 | 5O60|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | Electron microscopy | 3.18 | 2017-07-12 |
| 12 | 7MSH|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | Electron microscopy | 3.23 | 2022-02-02 |
| 13 | 7XAM|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | Electron microscopy | 3.5 | 2023-05-03 |
| 14 | 6DZP|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | Electron microscopy | 3.42 | 2018-10-03 |
| 15 | 6DZI|1|B | 5S ribosomal RNA | 5S RNA (118-MER) | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | Electron microscopy | 3.46 | 2018-09-26 |
| 16 | 7F0D|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycobacterium tuberculosis H37Ra | Bacteria | RF00001 | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | Electron microscopy | 3.3 | 2022-06-29 |
| 17 | 7Y41|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | Electron microscopy | 4.1 | 2023-05-03 |
Release history
| Release | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8FR8|1|B | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | ELECTRON MICROSCOPY | 2.76 | 118 | |
| 2 | 7S0S|1|i | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.05 | 118 | |
| 3 | 7Y41|1|B | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | ELECTRON MICROSCOPY | 4.1 | 118 | |
| 4 | 7XAM|1|B | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | ELECTRON MICROSCOPY | 3.5 | 118 | |
| 5 | 5O60|1|B | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.18 | 118 | |
| 6 | 6DZI|1|B | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | ELECTRON MICROSCOPY | 3.46 | 118 | |
| 7 | 6DZP|1|B | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.42 | 118 | |
| 8 | 5XYM|1|B | Large subunit of Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.08 | 116 | |
| 9 | 7MSC|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | ELECTRON MICROSCOPY | 2.97 | 115 | |
| 10 | 7MSH|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | ELECTRON MICROSCOPY | 3.23 | 115 | |
| 11 | 7MT3|1|B | Mtb 70S with P/E tRNA | ELECTRON MICROSCOPY | 2.8 | 115 | |
| 12 | 7MT2|1|B | Mtb 70S initiation complex | ELECTRON MICROSCOPY | 2.76 | 115 | |
| 13 | 7MT7|1|B | Mtb 70S with P and E site tRNAs | ELECTRON MICROSCOPY | 2.71 | 115 | |
| 14 | 7MSM|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | ELECTRON MICROSCOPY | 2.79 | 115 | |
| 15 | 7MSZ|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | ELECTRON MICROSCOPY | 3.1 | 115 | |
| 16 | 7KGB|1|B | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | ELECTRON MICROSCOPY | 2.7 | 115 | |
| 17 | 7F0D|1|B | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | ELECTRON MICROSCOPY | 3.3 | 115 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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