Equivalence class NR_all_45609.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TNU|1|m (rep) | Transfer RNA | A-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 2 | 8UTI|1|m | Transfer RNA | A site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Eukaryotic 80S ribosome with Reh1 and A/P site tRNA | Electron microscopy | 3.13 | 2024-11-06 |
| 3 | 8UT0|1|m | Transfer RNA | A site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA | Electron microscopy | 3.22 | 2024-11-06 |
| 4 | 7RR5|1|A | Transfer RNA | A-tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 5 | 6HD7|1|A | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 2018-12-19 |
| 6 | 5MC6|1|m | Transfer RNA | A-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 2017-01-18 |
| 7 | 7NRC|1|Sm | Transfer RNA | RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3'), tRNA (76-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | Electron microscopy | 3.9 | 2021-05-05 |
| 8 | 5GAK|1|A | Transfer RNA | The A-site tRNA was modeled based on an E. coli tRNA-Lys | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 2016-02-24 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8UTI|1|m | Eukaryotic 80S ribosome with Reh1 and A/P site tRNA | ELECTRON MICROSCOPY | 3.13 | 76 | |
| 2 | 8UT0|1|m | Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA | ELECTRON MICROSCOPY | 3.22 | 76 | |
| 3 | 7NRC|1|Sm | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | ELECTRON MICROSCOPY | 3.9 | 76 | |
| 4 | 6TNU|1|m | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 5 | 5MC6|1|m | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 76 | |
| 6 | 7RR5|1|A | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 76 | |
| 7 | 6HD7|1|A | Cryo-EM structure of the ribosome-NatA complex | ELECTRON MICROSCOPY | 3.4 | 76 | |
| 8 | 5GAK|1|A | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | ELECTRON MICROSCOPY | 3.88 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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