Equivalence class NR_all_46995.8 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5VYC|1|i2 (rep) | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 2 | 5VYC|1|i3 | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 3 | 5VYC|1|i5 | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 4 | 5VYC|1|i1 | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 5 | 5VYC|1|i6 | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 6 | 5VYC|1|i4 | Small subunit ribosomal RNA | Human 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-ray diffraction | 6 | 2017-07-19 |
| 7 | 6QZP|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 8 | 6EK0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 |
| 9 | 6OM0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 10 | 6OLE|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 11 | 6OLG|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
| 12 | 6OLI|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
| 13 | 6G18|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | Electron microscopy | 3.6 | 2018-06-06 |
| 14 | 6G5I|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | Electron microscopy | 3.5 | 2018-06-06 |
| 15 | 4UG0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 16 | 6IP8|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | Electron microscopy | 3.9 | 2019-05-29 |
| 17 | 6IP5|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | Electron microscopy | 3.9 | 2019-05-29 |
| 18 | 6G5H|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | Electron microscopy | 3.6 | 2018-06-06 |
| 19 | 6OM7|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | Electron microscopy | 3.7 | 2019-06-19 |
| 20 | 6OLZ|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | Electron microscopy | 3.9 | 2019-06-19 |
| 21 | 5AJ0|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
| 22 | 6OLF|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | Electron microscopy | 3.9 | 2019-06-19 |
| 23 | 5A2Q|1|2 | Small subunit ribosomal RNA | 18S RRNA | Homo sapiens | Eukarya | RF01960 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 24 | 6G51|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State D | Electron microscopy | 4.1 | 2018-06-06 |
| 25 | 6G4S|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | Electron microscopy | 4 | 2018-06-06 |
| 26 | 6IP6|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) | Electron microscopy | 4.5 | 2019-05-29 |
| 27 | 5OA3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 28 | 5LKS|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | Electron microscopy | 3.6 | 2017-04-26 |
| 29 | 6G53|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State E | Electron microscopy | 4.5 | 2018-06-06 |
| 30 | 6G4W|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State A | Electron microscopy | 4.5 | 2018-06-06 |
| 31 | 4V6X|1|B2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the human 80S ribosome | Electron microscopy | 5 | 2014-07-09 |
| 32 | 5T2C|1|AA | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 33 | 6FEC|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human cap-dependent 48S pre-initiation complex | Electron microscopy | 6.3 | 2018-03-14 |
| 34 | 5A8L|1|B | Small subunit ribosomal RNA | HUMAN 18S RIBOSOMAL RNA | Homo sapiens | Eukarya | RF01960 | Human eRF1 and the hCMV nascent peptide in the translation termination complex | Electron microscopy | 3.8 | 2015-12-02 |
Release history
| Release | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_46995.8 | NR_all_46995.7 | 3.79 | (27) 4UG0|1|S2, 4V6X|1|B2, 5A2Q|1|2, 5A8L|1|B, 5AJ0|1|B1, 5LKS|1|S2, 5OA3|1|2, 5T2C|1|AA, 5VYC|1|i1, 5VYC|1|i2, 5VYC|1|i3, 5VYC|1|i4, 5VYC|1|i5, 5VYC|1|i6, 6EK0|1|S2, 6FEC|1|A, 6G18|1|2, 6G4S|1|2, 6G4W|1|2, 6G51|1|2, 6G53|1|2, 6G5H|1|2, 6G5I|1|2, 6IP5|1|2m, 6IP6|1|2m, 6IP8|1|2m, 6QZP|1|S2 | (7) 6OLE|1|S2, 6OLF|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OLZ|1|B1, 6OM0|1|S2, 6OM7|1|S2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_46995.8 | NR_all_46995.9 | 3.122 | (34) 4UG0|1|S2, 4V6X|1|B2, 5A2Q|1|2, 5A8L|1|B, 5AJ0|1|B1, 5LKS|1|S2, 5OA3|1|2, 5T2C|1|AA, 5VYC|1|i1, 5VYC|1|i2, 5VYC|1|i3, 5VYC|1|i4, 5VYC|1|i5, 5VYC|1|i6, 6EK0|1|S2, 6FEC|1|A, 6G18|1|2, 6G4S|1|2, 6G4W|1|2, 6G51|1|2, 6G53|1|2, 6G5H|1|2, 6G5I|1|2, 6IP5|1|2m, 6IP6|1|2m, 6IP8|1|2m, 6OLE|1|S2, 6OLF|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OLZ|1|B1, 6OM0|1|S2, 6OM7|1|S2, 6QZP|1|S2 | (0) | (3) 6Y0G|1|S2, 6Y2L|1|S2, 6Y57|1|S2 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5A8L|1|B | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 67 | |
| 2 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 | |
| 3 | 6EK0|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1706 | |
| 4 | 6OLI|1|S2 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 1680 | |
| 5 | 6OLE|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 | |
| 6 | 6OLF|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 1680 | |
| 7 | 5AJ0|1|B1 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 1708 | |
| 8 | 6OLG|1|B1 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 1708 | |
| 9 | 6OLZ|1|B1 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 1708 | |
| 10 | 6FEC|1|A | Human cap-dependent 48S pre-initiation complex | ELECTRON MICROSCOPY | 6.3 | 1776 | |
| 11 | 6IP5|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 1742 | |
| 12 | 6IP6|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) | ELECTRON MICROSCOPY | 4.5 | 1742 | |
| 13 | 6IP8|1|2m | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 1742 | |
| 14 | 5LKS|1|S2 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 1742 | |
| 15 | 4UG0|1|S2 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 1742 | |
| 16 | 5T2C|1|AA | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 1742 | |
| 17 | 5VYC|1|i4 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 18 | 5VYC|1|i1 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 19 | 5VYC|1|i2 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 20 | 5VYC|1|i3 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 21 | 5VYC|1|i5 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 22 | 5VYC|1|i6 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 | |
| 23 | 4V6X|1|B2 | Structure of the human 80S ribosome | ELECTRON MICROSCOPY | 5 | 1861 | |
| 24 | 5A2Q|1|2 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 1665 | |
| 25 | 5OA3|1|2 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 1661 | |
| 26 | 6G5H|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 1665 | |
| 27 | 6G5I|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 1657 | |
| 28 | 6G18|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 1658 | |
| 29 | 6OM7|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 1680 | |
| 30 | 6OM0|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 | |
| 31 | 6G53|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State E | ELECTRON MICROSCOPY | 4.5 | 1659 | |
| 32 | 6G4W|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State A | ELECTRON MICROSCOPY | 4.5 | 1563 | |
| 33 | 6G51|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State D | ELECTRON MICROSCOPY | 4.1 | 1659 | |
| 34 | 6G4S|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 1613 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: