RNA 3D Hub //

Equivalence class NR_all_49493.2 Current

Showing 1 to 2 of 2 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19IIZ|1|B+ 9IIZ|1|C (rep)RNA (25-MER), RNA (5'-R(P*AP*GP*CP*CP*AP*AP*GP*UP*UP*UP*CP*CP*AP*UP*GP*UP*UP*GP*AP*UP*GP*GP*UP*A)-3')Homo sapiensCryo-EM Structure of EfPiwi-piRNA-target (25-nt, comma)Electron microscopy3.8492024-11-13
29IJ2|1|B+ 9IJ2|1|CRNA (5'-R(P*CP*AP*AP*GP*UP*UP*UP*CP*CP*AP*UP*GP*UP*UP*GP*AP*UP*GP*GP*UP*A)-3'), RNA (5'-R(P*UP*UP*AP*CP*CP*AP*UP*CP*AP*AP*CP*AP*UP*GP*GP*AP*AP*AP*CP*UP*UP*G)-3')Homo sapiensCryo-EM Structure of MILI-piRNA-target (22-nt, comma)Electron microscopy3.9432024-11-13

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.3923.393
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-182025-06-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 2 of 2 entries
#SViewPDBTitleMethodResolution#NTs
19IIZ|1|B+ 9IIZ|1|CCryo-EM Structure of EfPiwi-piRNA-target (25-nt, comma)ELECTRON MICROSCOPY3.849
29IJ2|1|B+ 9IJ2|1|CCryo-EM Structure of MILI-piRNA-target (22-nt, comma)ELECTRON MICROSCOPY3.943

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

9IIZ|1|B+9IIZ|1|C:9IIZ|1|B+9IIZ|1|C = 09IIZ|1|B+9IIZ|1|C:9IJ2|1|B+9IJ2|1|C = 0.39779IJ2|1|B+9IJ2|1|C:9IIZ|1|B+9IIZ|1|C = 0.39779IJ2|1|B+9IJ2|1|C:9IJ2|1|B+9IJ2|1|C = 09IIZ|1|B+9IIZ|1|C9IJ2|1|B+9IJ2|1|CDiscrepancy0.000.100.200.30

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