#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12C4Q|1|R (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.38172005-11-07
22C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.68172006-01-05
32C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.38172005-11-07
42BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.2172005-08-18
52C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.68132006-01-05
62IZ8|1|RRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2MS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.3162006-07-27
72C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.6132006-01-05
82C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.6172006-01-05
92C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.8152006-01-05
102BU1|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.2172005-08-18
112C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.65142006-01-05
122C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.8132006-01-05
132IZ8|1|SRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2MS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.3132006-07-27
142C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.65132006-01-05
151ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
161ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
172IZ9|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.85152006-07-27
182IZ9|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.85152006-07-27
192BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.91192006-03-22
202BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87A mutant) - RNA hairpin complexX-ray diffraction3152006-03-22
212BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.91172006-03-22
222BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87A mutant) - RNA hairpin complexX-ray diffraction3132006-03-22
231AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction3161997-12-24
241AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.8161997-12-24
251AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.8121997-12-24
261AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction3141997-12-24
272IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.7132007-07-03
282IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.7132007-07-03
291ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7161997-04-21
302B2E|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.15162006-05-09
311KUO|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Ms2-RNA Hairpin (C-10) ComplexX-ray diffraction2.7132002-02-08
321KUO|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Ms2-RNA Hairpin (C-10) ComplexX-ray diffraction2.7132002-02-08
332B2G|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.02162006-05-09
341ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.86191998-12-07
351ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.86191998-12-07
361ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
372B2E|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.15142006-05-09
382B2G|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.02152006-05-09

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.150
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-28

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
12B2E|1|SRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1514
22B2E|1|RRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1516
32C51|1|SMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
42B2G|1|SMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0215
52IZM|1|RMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
61KUO|1|RMs2-RNA Hairpin (C-10) ComplexX-RAY DIFFRACTION2.713
71AQ3|1|SBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
81AQ4|1|SSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
91ZDI|1|SRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
101ZDK|1|SSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
111ZDH|1|SMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
121ZDK|1|RSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
131ZDH|1|RMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
141ZDI|1|RRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
151AQ4|1|RSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
161AQ3|1|RBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
172C51|1|RMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
182C50|1|RMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
192B2G|1|RMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0216
202BNY|1|RMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
212C4Q|1|RMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3817
222BU1|1|RMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.217
232IZ8|1|RMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.316
242IZ8|1|SMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.313
251KUO|1|SMs2-RNA Hairpin (C-10) ComplexX-RAY DIFFRACTION2.713
262IZM|1|SMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
272C4Q|1|SMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3817
282BU1|1|SMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.217
292C50|1|SMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
302BNY|1|SMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
312C4Z|1|SMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.613
322C4Y|1|SMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6813
332BQ5|1|SMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
342BQ5|1|RMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
352C4Y|1|RMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6817
362C4Z|1|RMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.617
372IZ9|1|RMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8515
382IZ9|1|SMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8515

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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