Equivalence class NR_all_60484.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QCA|1|L50 (rep) | Large subunit ribosomal RNA | RNA 23S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome | Electron microscopy | 2.78 | 2022-11-30 |
| 2 | 8BR3|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | Electron microscopy | 9.55 | 2023-04-12 |
| 3 | 8P5D|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | Electron microscopy | 9.55 | 2023-06-21 |
| 4 | 7QJH|1|K50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
| 5 | 7QJH|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
| 6 | 8P60|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 11.3 | 2023-06-21 |
| 7 | 8P60|1|K50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 11.3 | 2023-06-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_60484.1 | NR_all_28561.2 | 3.288 | (4) 7QCA|1|L50, 7QJH|1|K50, 7QJH|1|L50, 8BR3|1|L50 | (3) 8P5D|1|L50, 8P60|1|K50, 8P60|1|L50 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_60484.1 | NR_all_39468.1 | 3.299 | (4) 7QCA|1|L50, 8P5D|1|L50, 8P60|1|K50, 8P60|1|L50 | (3) 7QJH|1|K50, 7QJH|1|L50, 8BR3|1|L50 | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8P5D|1|L50 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | ELECTRON MICROSCOPY | 9.55 | 2499 | |
| 2 | 8BR3|1|L50 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | ELECTRON MICROSCOPY | 9.55 | 2499 | |
| 3 | 7QJH|1|L50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 2499 | |
| 4 | 8P60|1|L50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 11.3 | 2499 | |
| 5 | 7QCA|1|L50 | Spraguea lophii ribosome | ELECTRON MICROSCOPY | 2.78 | 2499 | |
| 6 | 8P60|1|K50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 11.3 | 2499 | |
| 7 | 7QJH|1|K50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 2499 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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