#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17EZ2|1|N (rep)Group I catalytic intronHolo L-16 ScaI Tetrahymena ribozyme, Holo L-16 ScaI Tetrahymena ribozyme S1, Holo L-16 ScaI Tetrahymena ribozyme S2Tetrahymena thermophilaEukaryaRF00028Holo L-16 ScaI Tetrahymena ribozymeElectron microscopy3.052021-08-25
27XSN|1|NGroup I catalytic intronRNA (387-MER)Tetrahymena thermophilaEukaryaRF00028Native Tetrahymena ribozyme conformationElectron microscopy3.012022-08-03
37EZ0|1|NGroup I catalytic intronApo L-21 ScaI Tetrahymena ribozymeTetrahymena thermophilaEukaryaRF00028Apo L-21 ScaI Tetrahymena ribozymeElectron microscopy3.142021-08-25
47R6L|1|AGroup I catalytic intronGroup I intron, 3 prime fragment plus 3 prime exon, Group I intron, 5 prime fragmentTetrahymena thermophilaEukaryaRF000285 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructElectron microscopy2.852022-05-04
57XSK|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 1Electron microscopy3.532022-08-03
67R6M|1|AGroup I catalytic intronGroup I intron, Ligated exon mimic of the Group I intronTetrahymena thermophilaEukaryaRF00028Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructElectron microscopy3.682022-05-04
77UVT|1|AGroup I catalytic intronRNA (386-MER)Tetrahymena thermophilaEukaryaRF00028Kinetically trapped misfolded state of the Tetrahymena ribozymeElectron microscopy3.92022-08-31
87XSL|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 2Electron microscopy3.842022-08-03
97XSM|1|NGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Misfolded Tetrahymena ribozyme conformation 3Electron microscopy4.012022-08-03
107R6N|1|AGroup I catalytic intronGroup I intronTetrahymena thermophilaEukaryaRF00028Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric constructElectron microscopy4.12022-05-04
116WLS|11|AGroup I catalytic intronRNA (388-MER)Tetrahymena thermophilaEukaryaRF00028Tetrahymena ribozyme models, 6.8 Angstrom resolutionElectron microscopy6.82020-07-08

Release history

Release3.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.275
Date2022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_60848.2NR_all_60848.13.246(10) 6WLS|11|A, 7EZ0|1|N, 7EZ2|1|N, 7R6L|1|A, 7R6M|1|A, 7R6N|1|A, 7XSK|1|N, 7XSL|1|N, 7XSM|1|N, 7XSN|1|N(1) 7UVT|1|A(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17XSL|1|NMisfolded Tetrahymena ribozyme conformation 2ELECTRON MICROSCOPY3.84388
27XSM|1|NMisfolded Tetrahymena ribozyme conformation 3ELECTRON MICROSCOPY4.01388
37XSK|1|NMisfolded Tetrahymena ribozyme conformation 1ELECTRON MICROSCOPY3.53388
47UVT|1|AKinetically trapped misfolded state of the Tetrahymena ribozymeELECTRON MICROSCOPY3.9386
56WLS|11|ATetrahymena ribozyme models, 6.8 Angstrom resolutionELECTRON MICROSCOPY6.8388
67EZ0|1|NApo L-21 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.14387
77XSN|1|NNative Tetrahymena ribozyme conformationELECTRON MICROSCOPY3.01387
87R6N|1|AExon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric constructELECTRON MICROSCOPY4.1354
97EZ2|1|NHolo L-16 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.05392
107R6M|1|APost-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructELECTRON MICROSCOPY3.68356
117R6L|1|A5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructELECTRON MICROSCOPY2.85343

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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