Equivalence class NR_all_64693.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1PBR|1|A (rep) | 16S RIBOSOMAL RNA | STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE | Solution NMR | 27 | 1997-09-17 | |||||
| 2 | 1BYJ|31|A | RNA (16S RNA) | GENTAMICIN C1A A-SITE COMPLEX | Solution NMR | 27 | 1999-10-29 | |||||
| 3 | 1FYP|1|A | FRAGMENT OF 18S RIBOSOMAL RNA | EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX | Solution NMR | 27 | 2001-03-14 | |||||
| 4 | 1FYO|1|A | FRAGMENT OF 18S RIBOSOMAL RNA | EUKARYOTIC DECODING REGION A-SITE RNA | Solution NMR | 27 | 2001-03-14 | |||||
| 5 | 2M4Q|6|1 | RNA (27-MER) | synthetic construct | NMR structure of E. coli ribosomela decoding site with apramycin | Solution NMR | 27 | 2013-03-20 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_64693.1 | NR_all_04218.1 | 2.93 | (2) 1FYO|1|A, 2M4Q|6|1 | (3) 1BYJ|31|A, 1FYP|1|A, 1PBR|1|A | (0) |
| NR_all_64693.1 | NR_all_52226.1 | 2.93 | (1) 1FYP|1|A | (4) 1BYJ|31|A, 1FYO|1|A, 1PBR|1|A, 2M4Q|6|1 | (0) |
| NR_all_64693.1 | NR_all_54907.1 | 2.93 | (2) 1BYJ|31|A, 1PBR|1|A | (3) 1FYO|1|A, 1FYP|1|A, 2M4Q|6|1 | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1FYO|1|A | EUKARYOTIC DECODING REGION A-SITE RNA | SOLUTION NMR | 27 | ||
| 2 | 2M4Q|6|1 | NMR structure of E. coli ribosomela decoding site with apramycin | SOLUTION NMR | 27 | ||
| 3 | 1BYJ|31|A | GENTAMICIN C1A A-SITE COMPLEX | SOLUTION NMR | 27 | ||
| 4 | 1PBR|1|A | STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE | SOLUTION NMR | 27 | ||
| 5 | 1FYP|1|A | EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX | SOLUTION NMR | 27 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: