#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
111AO|1|B (rep)RNA (5'-R(*AP*AP*AP*A)-3')synthetic constructCrystal structure of mouse DXO in complex with the oligonucleotide pA5 with 5'phosphate in the product and substrate statesX-ray diffraction1.5942026-06-10
27SOS|1|BRNA (5'-R(*AP*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAAA RNAX-ray diffraction1.2542022-08-03
39U49|1|Ccyclic tetra-adenosine monophosphate(cA4)synthetic constructcrystal structure of Cdn1 in complex with cA4X-ray diffraction1.942026-02-04
46XL1|1|CcA4synthetic constructcrystal structure of cA4-activated Cad1(D294N)X-ray diffraction1.9542020-12-30
56SCE|1|Bcyclic oligoadenylatesynthetic constructStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-ray diffraction1.8342020-02-19
68Q42|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNAX-ray diffraction1.9742023-11-22
76YUD|1|Kcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.8442020-08-19
86YUD|1|Ocyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.8442020-08-19
96SCF|1|Icyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.5542019-10-30
106YUD|1|Pcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.8442020-08-19
116SCF|1|Kcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.5542019-10-30
126SCF|1|Mcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.5542019-10-30
136SCF|1|Lcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.5542019-10-30
146YUD|1|Mcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.8442020-08-19
158T65|1|CRNA (5'-R(P*AP*AP*AP*A)-3')Nitrosococcus halophilus Nc 4cA4 bound Cam1X-ray diffraction2.0942024-01-10
166YUD|1|Qcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.8442020-08-19
178Q44|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNAX-ray diffraction2.342023-11-22
188Q40|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4 activated Can2 in complex with a cleaved DNA substrateX-ray diffraction2.2142023-11-22
198Q41|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNAX-ray diffraction2.3842023-11-22
209YLX|1|ICyclic tetraadenylatesynthetic constructCryo-EM structure of the CbCash filament bound to cA4Electron microscopy2.4542026-04-29
219YLX|1|JCyclic tetraadenylatesynthetic constructCryo-EM structure of the CbCash filament bound to cA4Electron microscopy2.4542026-04-29
228Q43|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNAX-ray diffraction2.2842023-11-22
238QJK|1|CCyclic tetraadenosine monophosphate (cA4)synthetic constructStructure of the cytoplasmic domain of csx23 from Vibrio cholera in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.76142024-08-07
249YLU|1|Kcyclic-tetra-adenylatesynthetic constructcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUElectron microscopy2.6542026-04-29
258BAO|1|CCyclic tetra-adenylate (cA4)synthetic constructDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-ray diffraction2.0642022-11-30
266WXQ|1|Ecyclic tetraadenylatesynthetic constructCrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-ray diffraction2.0542021-11-17
276W11|1|CcA4Saccharolobus solfataricusThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-ray diffraction2.4642021-03-10
286O6X|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.1142019-07-31
299JXX|1|XRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of SiRe_0806 in complex with cA4X-ray diffraction2.542025-07-23
309JXX|1|YRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of SiRe_0806 in complex with cA4X-ray diffraction2.542025-07-23
317DID|1|CRNA (5'-R(*AP*AP*AP*A)-3')Mycoplasma genitalium G37Mycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-ray diffraction1.942021-03-17
324BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-ray diffraction2.542012-10-03
339YLU|1|Lcyclic-tetra-adenylatesynthetic constructcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUElectron microscopy2.6542026-04-29
349EYK|1|EA4>p (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>pElectron microscopy2.8442024-10-02
357BDV|1|Fcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.0242021-03-03
368B0R|1|DRNA (5'-R(P*AP*AP*AP*A)-3')SulfurihydrogenibiumStructure of the CalpL/cA4 complexX-ray diffraction2.242022-11-16
379C69|1|CAAAABacteroidales bacteriumThe CRISPR associated CARF-adenosine deaminase, Cad1-CARF in the cA4 bound formX-ray diffraction2.442024-10-30
389MW9|1|gRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
399MW9|1|fRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
407BDV|1|Hcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.0242021-03-03
419EYJ|1|DcA4synthetic constructCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4Electron microscopy2.9742024-10-02
429MW9|1|hRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
439MW9|1|jRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
449MW9|1|eRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
459MW9|1|aRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
469MW9|1|iRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
479MW9|1|bRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
489MW9|1|dRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
499MW9|1|kRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
509MW9|1|cRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyElectron microscopy342025-04-16
516O6X|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.1142019-07-31
529EYI|1|DA4p (5'-R(*AP*AP*AP*AP)-3')synthetic constructCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4pElectron microscopy2.7542024-10-02
539EYI|1|EA4p (5'-R(*AP*AP*AP*AP)-3')synthetic constructCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4pElectron microscopy2.7542024-10-02
549YLX|1|LCyclic tetraadenylatesynthetic constructCryo-EM structure of the CbCash filament bound to cA4Electron microscopy2.4542026-04-29
559MUD|1|oRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
568Q3Z|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 from Thermoanaerobacter brockiiX-ray diffraction3.1542023-11-22
579MUD|1|fRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
586R9R|1|EDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.722019-10-02
596O7B|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.442019-07-31
609MUO|1|aRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD analog BADElectron microscopy3.342025-04-16
619YLX|1|KCyclic tetraadenylatesynthetic constructCryo-EM structure of the CbCash filament bound to cA4Electron microscopy2.4542026-04-29
629MUD|1|eRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
639MUD|1|bRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
649MUD|1|kRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
659EYK|1|DA4>p (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>pElectron microscopy2.8442024-10-02
669MUD|1|dRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
679MUO|1|bRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD analog BADElectron microscopy3.342025-04-16
689MUD|1|jRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
699MUD|1|gRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
708PHJ|1|ZCyclic tetraadenosine monophosphate (cA4)Streptococcus thermophiluscA4-bound Cami1 in complex with 70S ribosomeElectron microscopy3.6742023-12-13
719MUD|1|lRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
729MUD|1|cRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
736O6V|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.3542019-07-31
746WXX|1|YcA4synthetic constructcrystal structure of cA4-activated Cad1X-ray diffraction342020-12-30
756WXX|1|XcA4synthetic constructcrystal structure of cA4-activated Cad1X-ray diffraction342020-12-30
769MUD|1|iRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
779MUD|1|hRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
787YGL|1|CRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-ray diffraction2.542023-02-15
799YLU|1|Mcyclic-tetra-adenylatesynthetic constructcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUElectron microscopy2.6542026-04-29
806R7B|1|DRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.1242019-10-02
819MUD|1|mRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
829MUD|1|aRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
839YLU|1|Ncyclic-tetra-adenylatesynthetic constructcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUElectron microscopy2.6542026-04-29
846OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.842019-07-31
856OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.842019-07-31
869MUD|1|nRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyElectron microscopy3.442025-04-16
879MUE|1|bRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD (ADPR modelled)Electron microscopy442025-04-16
889MUE|1|aRNA (5'-R(P*AP*AP*AP*A)-3')bacteriumCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD (ADPR modelled)Electron microscopy442025-04-16
898JH1|1|CRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal Structure of the Csm6 Y161A mutant from Thermus thermophilus HB8 in complex with cyclic-tetraadenylate (cA4)X-ray diffraction2.8942023-12-13
909C77|1|GRNA (5'-R(P*AP*AP*AP*A)-3')Bacteroidales bacteriumcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.Electron microscopy3.242024-10-30
916R9R|1|DDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.742019-10-02
929C77|1|HRNA (5'-R(P*AP*AP*AP*A)-3')Bacteroidales bacteriumcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.Electron microscopy3.242024-10-30
936O7I|1|IRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy3.242019-07-31
947YGH|1|CRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)X-ray diffraction3.1142023-02-15
956O6V|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.3542019-07-31
969GU5|1|MRNA (5'-R(P*AP*AP*AP*A)-3')RNA interference vector pBSK-GusCrystal Structure of Hfq V22AX-ray diffraction2.942025-02-05
979C77|1|IRNA (5'-R(P*AP*AP*AP*A)-3')Bacteroidales bacteriumcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.Electron microscopy3.242024-10-30
986R7B|1|ERNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.1222019-10-02
996OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.832019-07-31
1006O7B|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.442019-07-31
1018Y7G|1|CRNA (5'-R(P*AP*AP*AP*A)-3')Marinitoga sp. 1155Crystal structure of the Marinitoga sp. Csx1-Crn2 H495A mutant in complex with cyclic-tetraadenylate (cA4)X-ray diffraction3.1542024-07-17
1026OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.832019-07-31
1036O7H|1|KCyclic DNA cA4synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy2.942019-07-31
1045E02|1|CRNA (5'-R(*AP*AP*AP*A)-3')synthetic constructStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-ray diffraction3.842016-07-06
1057Z55|1|CCCCyclic RNA cA4synthetic constructCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-ray diffraction1.66442022-11-23

Release history

Release4.43
Date2026-06-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
29GU5|1|MCrystal Structure of Hfq V22AX-RAY DIFFRACTION2.94
35E02|1|CStructure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian ClockX-RAY DIFFRACTION3.84
44BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
57DID|1|CMycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-RAY DIFFRACTION1.94
68QJK|1|CStructure of the cytoplasmic domain of csx23 from Vibrio cholera in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.7614
76SCE|1|BStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.834
89YLU|1|McryoEM structure of CbCash filament with cA4 and tRNA Ile CAUELECTRON MICROSCOPY2.654
99YLX|1|KCryo-EM structure of the CbCash filament bound to cA4ELECTRON MICROSCOPY2.454
108T65|1|CcA4 bound Cam1X-RAY DIFFRACTION2.094
116WXQ|1|ECrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-RAY DIFFRACTION2.054
126SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
136YUD|1|MStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
146YUD|1|QStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
156YUD|1|OStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
166YUD|1|PStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
176YUD|1|KStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
186O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
196O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
206R9R|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.74
219C77|1|GcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.ELECTRON MICROSCOPY3.24
229C77|1|HcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.ELECTRON MICROSCOPY3.24
239JXX|1|YCrystal structure of SiRe_0806 in complex with cA4X-RAY DIFFRACTION2.54
246OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.84
256OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.84
268PHJ|1|ZcA4-bound Cami1 in complex with 70S ribosomeELECTRON MICROSCOPY3.674
279C69|1|CThe CRISPR associated CARF-adenosine deaminase, Cad1-CARF in the cA4 bound formX-RAY DIFFRACTION2.44
288JH1|1|CCrystal Structure of the Csm6 Y161A mutant from Thermus thermophilus HB8 in complex with cyclic-tetraadenylate (cA4)X-RAY DIFFRACTION2.894
297YGH|1|CCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)X-RAY DIFFRACTION3.114
307YGL|1|CCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-RAY DIFFRACTION2.54
318Q3Z|1|XCrystal structure of cA4-bound Can2 from Thermoanaerobacter brockiiX-RAY DIFFRACTION3.154
328Q43|1|XCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNAX-RAY DIFFRACTION2.284
338Q42|1|XCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNAX-RAY DIFFRACTION1.974
348Q44|1|XCrystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNAX-RAY DIFFRACTION2.34
358Q41|1|XCrystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNAX-RAY DIFFRACTION2.384
368Q40|1|XCrystal structure of cA4 activated Can2 in complex with a cleaved DNA substrateX-RAY DIFFRACTION2.214
377BDV|1|FStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
388BAO|1|CDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-RAY DIFFRACTION2.064
399EYJ|1|DCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4ELECTRON MICROSCOPY2.974
409EYI|1|ECryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4pELECTRON MICROSCOPY2.754
419EYI|1|DCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4pELECTRON MICROSCOPY2.754
429EYK|1|DCryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>pELECTRON MICROSCOPY2.844
439EYK|1|ECryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>pELECTRON MICROSCOPY2.844
448B0R|1|DStructure of the CalpL/cA4 complexX-RAY DIFFRACTION2.24
459MUD|1|mCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
469MUD|1|aCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
479MUD|1|nCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
489MUD|1|dCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
499MUD|1|oCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
509MUD|1|cCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
519MUD|1|bCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
529MUD|1|lCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
539MUE|1|aCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD (ADPR modelled)ELECTRON MICROSCOPY44
549MUD|1|eCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
559MW9|1|hCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
569MW9|1|kCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
579MUO|1|aCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD analog BADELECTRON MICROSCOPY3.34
589MUO|1|bCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD analog BADELECTRON MICROSCOPY3.34
599MUD|1|fCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
609MW9|1|cCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
619MUE|1|bCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD (ADPR modelled)ELECTRON MICROSCOPY44
629MUD|1|hCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
639MUD|1|jCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
649MUD|1|kCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
659MW9|1|aCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
669MW9|1|dCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
679MW9|1|bCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
689MUD|1|gCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
699MW9|1|jCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
709MW9|1|gCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
719MW9|1|eCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
729MW9|1|fCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
739MW9|1|iCryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assemblyELECTRON MICROSCOPY34
749MUD|1|iCryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assemblyELECTRON MICROSCOPY3.44
759C77|1|IcryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.ELECTRON MICROSCOPY3.24
766O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
776R7B|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.124
786O7I|1|ICryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY3.24
796O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
806O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
819YLU|1|NcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUELECTRON MICROSCOPY2.654
829YLX|1|LCryo-EM structure of the CbCash filament bound to cA4ELECTRON MICROSCOPY2.454
836W11|1|CThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-RAY DIFFRACTION2.464
847Z55|1|CCCCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-RAY DIFFRACTION1.6644
859U49|1|Ccrystal structure of Cdn1 in complex with cA4X-RAY DIFFRACTION1.94
866XL1|1|Ccrystal structure of cA4-activated Cad1(D294N)X-RAY DIFFRACTION1.954
876WXX|1|Xcrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
886WXX|1|Ycrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
899JXX|1|XCrystal structure of SiRe_0806 in complex with cA4X-RAY DIFFRACTION2.54
907BDV|1|HStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
919YLU|1|LcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUELECTRON MICROSCOPY2.654
929YLX|1|JCryo-EM structure of the CbCash filament bound to cA4ELECTRON MICROSCOPY2.454
939YLU|1|KcryoEM structure of CbCash filament with cA4 and tRNA Ile CAUELECTRON MICROSCOPY2.654
949YLX|1|ICryo-EM structure of the CbCash filament bound to cA4ELECTRON MICROSCOPY2.454
956SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
966SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
976SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
988Y7G|1|CCrystal structure of the Marinitoga sp. Csx1-Crn2 H495A mutant in complex with cyclic-tetraadenylate (cA4)X-RAY DIFFRACTION3.154
996O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
1007SOS|1|BLaM domain of human LARP1 in complex with AAAA RNAX-RAY DIFFRACTION1.254
1016OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
10211AO|1|BCrystal structure of mouse DXO in complex with the oligonucleotide pA5 with 5'phosphate in the product and substrate statesX-RAY DIFFRACTION1.594
1036R7B|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.122
1046OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
1056R9R|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0237 s