RNA 3D Hub //

Equivalence class NR_all_66212.4 Current

Showing 1 to 6 of 6 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18IP8|1|RB+ 8IP8|1|SB (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, 60S ribosomal RNATriticum aestivumEukaryaRF02543 + RF00002Wheat 80S ribosome stalled on AUG-Stop boron dependentlyElectron microscopy2.933072024-02-21
28JIV|1|Aa+ 8JIV|1|AcLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNATriticum aestivumEukaryaRF02543 + RF00002Atomic structure of wheat ribosome reveals unique features of the plant ribosomesElectron microscopy2.8430152024-03-27
38IPB|1|RB+ 8IPB|1|SBLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, 60S ribosomal RNATriticum aestivumEukaryaRF02543 + RF00002Wheat 80S ribosome pausing on AUG-Stop with cycloheximideElectron microscopy3.433072024-02-21
48IPA|1|RB+ 8IPA|1|SBLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, 60S ribosomal RNATriticum aestivumEukaryaRF02543 + RF00002Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximideElectron microscopy3.433072024-02-21
54V7E|1|Aa+ 4V7E|1|AcLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, 60S ribosomal RNATriticum aestivumEukaryaRF02543 + RF00002Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosomeElectron microscopy5.535512014-07-09
64V3P|1|L1+ 4V3P|1|L2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S ribosomal RNA, 5.8S ribosomal RNATriticum aestivumEukaryaRF02543 + RF00002The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomesElectron microscopy3435112015-04-22

Release history

Release3.3783.3793.3803.3813.382
Date2025-03-132025-03-192025-03-262025-04-022025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 6 of 6 entries
#SViewPDBTitleMethodResolution#NTs
18JIV|1|Aa+ 8JIV|1|AcAtomic structure of wheat ribosome reveals unique features of the plant ribosomesELECTRON MICROSCOPY2.843015
28IP8|1|RB+ 8IP8|1|SBWheat 80S ribosome stalled on AUG-Stop boron dependentlyELECTRON MICROSCOPY2.93307
38IPA|1|RB+ 8IPA|1|SBWheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximideELECTRON MICROSCOPY3.43307
48IPB|1|RB+ 8IPB|1|SBWheat 80S ribosome pausing on AUG-Stop with cycloheximideELECTRON MICROSCOPY3.43307
54V7E|1|Aa+ 4V7E|1|AcModel of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosomeELECTRON MICROSCOPY5.53551
64V3P|1|L1+ 4V3P|1|L2The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomesELECTRON MICROSCOPY343511

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8JIV|1|Aa+8JIV|1|Ac:8JIV|1|Aa+8JIV|1|Ac = 08JIV|1|Aa+8JIV|1|Ac:8IP8|1|RB+8IP8|1|SB = 0.03608JIV|1|Aa+8JIV|1|Ac:8IPA|1|RB+8IPA|1|SB = 0.03768JIV|1|Aa+8JIV|1|Ac:8IPB|1|RB+8IPB|1|SB = 0.03788JIV|1|Aa+8JIV|1|Ac:4V7E|1|Aa+4V7E|1|Ac = 0.06718JIV|1|Aa+8JIV|1|Ac:4V3P|1|L1+4V3P|1|L2 not available8IP8|1|RB+8IP8|1|SB:8JIV|1|Aa+8JIV|1|Ac = 0.03608IP8|1|RB+8IP8|1|SB:8IP8|1|RB+8IP8|1|SB = 08IP8|1|RB+8IP8|1|SB:8IPA|1|RB+8IPA|1|SB = 0.01308IP8|1|RB+8IP8|1|SB:8IPB|1|RB+8IPB|1|SB = 0.01458IP8|1|RB+8IP8|1|SB:4V7E|1|Aa+4V7E|1|Ac = 0.06588IP8|1|RB+8IP8|1|SB:4V3P|1|L1+4V3P|1|L2 not available8IPA|1|RB+8IPA|1|SB:8JIV|1|Aa+8JIV|1|Ac = 0.03768IPA|1|RB+8IPA|1|SB:8IP8|1|RB+8IP8|1|SB = 0.01308IPA|1|RB+8IPA|1|SB:8IPA|1|RB+8IPA|1|SB = 08IPA|1|RB+8IPA|1|SB:8IPB|1|RB+8IPB|1|SB = 0.00778IPA|1|RB+8IPA|1|SB:4V7E|1|Aa+4V7E|1|Ac = 0.06308IPA|1|RB+8IPA|1|SB:4V3P|1|L1+4V3P|1|L2 not available8IPB|1|RB+8IPB|1|SB:8JIV|1|Aa+8JIV|1|Ac = 0.03788IPB|1|RB+8IPB|1|SB:8IP8|1|RB+8IP8|1|SB = 0.01458IPB|1|RB+8IPB|1|SB:8IPA|1|RB+8IPA|1|SB = 0.00778IPB|1|RB+8IPB|1|SB:8IPB|1|RB+8IPB|1|SB = 08IPB|1|RB+8IPB|1|SB:4V7E|1|Aa+4V7E|1|Ac = 0.06288IPB|1|RB+8IPB|1|SB:4V3P|1|L1+4V3P|1|L2 not available4V7E|1|Aa+4V7E|1|Ac:8JIV|1|Aa+8JIV|1|Ac = 0.06714V7E|1|Aa+4V7E|1|Ac:8IP8|1|RB+8IP8|1|SB = 0.06584V7E|1|Aa+4V7E|1|Ac:8IPA|1|RB+8IPA|1|SB = 0.06304V7E|1|Aa+4V7E|1|Ac:8IPB|1|RB+8IPB|1|SB = 0.06284V7E|1|Aa+4V7E|1|Ac:4V7E|1|Aa+4V7E|1|Ac = 04V7E|1|Aa+4V7E|1|Ac:4V3P|1|L1+4V3P|1|L2 not available4V3P|1|L1+4V3P|1|L2:8JIV|1|Aa+8JIV|1|Ac not available4V3P|1|L1+4V3P|1|L2:8IP8|1|RB+8IP8|1|SB not available4V3P|1|L1+4V3P|1|L2:8IPA|1|RB+8IPA|1|SB not available4V3P|1|L1+4V3P|1|L2:8IPB|1|RB+8IPB|1|SB not available4V3P|1|L1+4V3P|1|L2:4V7E|1|Aa+4V7E|1|Ac not available4V3P|1|L1+4V3P|1|L2:4V3P|1|L1+4V3P|1|L2 = 08JIV|1|Aa+8JIV|1|Ac8IP8|1|RB+8IP8|1|SB8IPA|1|RB+8IPA|1|SB8IPB|1|RB+8IPB|1|SB4V7E|1|Aa+4V7E|1|Ac4V3P|1|L1+4V3P|1|L2Discrepancy0.000.010.020.030.040.050.06

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