Equivalence class NR_all_68086.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9G8M|1|X (rep) | Cripavirus internal ribosome entry site (IRES) | CrPV-IRES RNA | Cricket paralysis virus | Viruses | RF00458 | human 80S ribosome bound by a SKI2-exosome complex | Electron microscopy | 3.3 | 194 | 2024-10-23 |
| 2 | 7ZJX|1|I | Cripavirus internal ribosome entry site (IRES) | CrPV IRES | Cricket paralysis virus | Viruses | RF00458 | Rabbit 80S ribosome programmed with SECIS and SBP2 | Electron microscopy | 3.1 | 163 | 2022-09-07 |
| 3 | 5IT9|1|i | Cripavirus internal ribosome entry site (IRES) | Cricket paralysis virus IRES RNA | Cricket paralysis virus | Viruses | RF00458 | Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. | Electron microscopy | 3.8 | 192 | 2016-05-18 |
| 4 | 7JQC|1|i | Cripavirus internal ribosome entry site (IRES) | Cricket paralysis virus IRES RNA | Cricket paralysis virus | Viruses | RF00458 | SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex | Electron microscopy | 3.3 | 143 | 2020-12-02 |
| 5 | 9G8O|1|X | Cripavirus internal ribosome entry site (IRES) | CrPV-IRES RNA | Cricket paralysis virus | Viruses | RF00458 | human 40S ribosome bound by a SKI238-exosome complex | Electron microscopy | 3.4 | 123 | 2024-10-16 |
| 6 | 4V92|1|AZ | Cripavirus internal ribosome entry site (IRES) | RNA OF CRICKET-PARALYSIS-VIRUS-IRES | Cricket paralysis virus | Viruses | RF00458 | Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES | Electron microscopy | 3.7 | 190 | 2014-07-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4V92|1|AZ | Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES | ELECTRON MICROSCOPY | 3.7 | 190 | |
| 2 | 9G8O|1|X | human 40S ribosome bound by a SKI238-exosome complex | ELECTRON MICROSCOPY | 3.4 | 123 | |
| 3 | 9G8M|1|X | human 80S ribosome bound by a SKI2-exosome complex | ELECTRON MICROSCOPY | 3.3 | 194 | |
| 4 | 7ZJX|1|I | Rabbit 80S ribosome programmed with SECIS and SBP2 | ELECTRON MICROSCOPY | 3.1 | 163 | |
| 5 | 7JQC|1|i | SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex | ELECTRON MICROSCOPY | 3.3 | 143 | |
| 6 | 5IT9|1|i | Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. | ELECTRON MICROSCOPY | 3.8 | 192 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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