RNA 3D Hub //

Equivalence class NR_all_68433.1 Obsolete

Showing 1 to 8 of 8 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14V49|1|AA (rep)Small subunit ribosomal RNA16S RIBOSOMAL RNAEscherichia coliBacteriaRF00177Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.715272014-07-09
24V4A|1|AASmall subunit ribosomal RNA16S RIBOSOMAL RNAEscherichia coliBacteriaRF00177Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.X-ray diffraction9.515332014-07-09
34V4G|1|EASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-ray diffraction11.515262014-07-09
44V4G|1|CASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-ray diffraction11.515262014-07-09
54V4G|1|AASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-ray diffraction11.515262014-07-09
64V4G|1|GASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-ray diffraction11.515262014-07-09
74V4G|1|IASmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-ray diffraction11.515262014-07-09
81ML5|1|ASmall subunit ribosomal RNA30S 16S RIBOSOMAL RNAEscherichia coliBacteriaRF00177Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy1415192003-01-14

Release history

Release3.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 8 of 8 entries
#SViewPDBTitleMethodResolution#NTs
14V4G|1|IACrystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-RAY DIFFRACTION11.51526
24V4G|1|EACrystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-RAY DIFFRACTION11.51526
34V4G|1|CACrystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-RAY DIFFRACTION11.51526
44V4G|1|AACrystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-RAY DIFFRACTION11.51526
54V4G|1|GACrystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.X-RAY DIFFRACTION11.51526
64V49|1|AACrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.71527
74V4A|1|AACrystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION9.51533
81ML5|1|AStructure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY141519

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

4V4G|1|IA:4V4G|1|IA = 04V4G|1|IA:4V4G|1|EA = 0.01864V4G|1|IA:4V4G|1|CA = 0.04494V4G|1|IA:4V4G|1|AA = 0.05224V4G|1|IA:4V4G|1|GA = 0.03984V4G|1|IA:4V49|1|AA = 0.07104V4G|1|IA:4V4A|1|AA = 0.07064V4G|1|IA:1ML5|1|A not available4V4G|1|EA:4V4G|1|IA = 0.01864V4G|1|EA:4V4G|1|EA = 04V4G|1|EA:4V4G|1|CA = 0.03004V4G|1|EA:4V4G|1|AA = 0.04024V4G|1|EA:4V4G|1|GA = 0.03204V4G|1|EA:4V49|1|AA = 0.06714V4G|1|EA:4V4A|1|AA = 0.06784V4G|1|EA:1ML5|1|A not available4V4G|1|CA:4V4G|1|IA = 0.04494V4G|1|CA:4V4G|1|EA = 0.03004V4G|1|CA:4V4G|1|CA = 04V4G|1|CA:4V4G|1|AA = 0.01384V4G|1|CA:4V4G|1|GA = 0.02004V4G|1|CA:4V49|1|AA = 0.06514V4G|1|CA:4V4A|1|AA = 0.06874V4G|1|CA:1ML5|1|A not available4V4G|1|AA:4V4G|1|IA = 0.05224V4G|1|AA:4V4G|1|EA = 0.04024V4G|1|AA:4V4G|1|CA = 0.01384V4G|1|AA:4V4G|1|AA = 04V4G|1|AA:4V4G|1|GA = 0.01784V4G|1|AA:4V49|1|AA = 0.06584V4G|1|AA:4V4A|1|AA = 0.07044V4G|1|AA:1ML5|1|A not available4V4G|1|GA:4V4G|1|IA = 0.03984V4G|1|GA:4V4G|1|EA = 0.03204V4G|1|GA:4V4G|1|CA = 0.02004V4G|1|GA:4V4G|1|AA = 0.01784V4G|1|GA:4V4G|1|GA = 04V4G|1|GA:4V49|1|AA = 0.06334V4G|1|GA:4V4A|1|AA = 0.06694V4G|1|GA:1ML5|1|A not available4V49|1|AA:4V4G|1|IA = 0.07104V49|1|AA:4V4G|1|EA = 0.06714V49|1|AA:4V4G|1|CA = 0.06514V49|1|AA:4V4G|1|AA = 0.06584V49|1|AA:4V4G|1|GA = 0.06334V49|1|AA:4V49|1|AA = 04V49|1|AA:4V4A|1|AA = 0.03094V49|1|AA:1ML5|1|A not available4V4A|1|AA:4V4G|1|IA = 0.07064V4A|1|AA:4V4G|1|EA = 0.06784V4A|1|AA:4V4G|1|CA = 0.06874V4A|1|AA:4V4G|1|AA = 0.07044V4A|1|AA:4V4G|1|GA = 0.06694V4A|1|AA:4V49|1|AA = 0.03094V4A|1|AA:4V4A|1|AA = 04V4A|1|AA:1ML5|1|A not available1ML5|1|A:4V4G|1|IA not available1ML5|1|A:4V4G|1|EA not available1ML5|1|A:4V4G|1|CA not available1ML5|1|A:4V4G|1|AA not available1ML5|1|A:4V4G|1|GA not available1ML5|1|A:4V49|1|AA not available1ML5|1|A:4V4A|1|AA not available1ML5|1|A:1ML5|1|A = 04V4G|1|IA4V4G|1|EA4V4G|1|CA4V4G|1|AA4V4G|1|GA4V49|1|AA4V4A|1|AA1ML5|1|ADiscrepancy0.000.020.040.06

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