NR_all_69813.19

Members (68)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9TQA\|1\|Y (rep)	Transfer RNA	A-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.06	72	2026-05-20
2	28UI\|1\|Y	Transfer RNA	A-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.1	72	2026-05-20
3	9TMI\|1\|Y	Transfer RNA	A-site Val-tRNA, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with A- and P-site tRNA	Electron microscopy	2.08	72	2026-05-20
4	28UM\|1\|Y	Transfer RNA	A-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.15	72	2026-05-20
5	28UK\|1\|Y	Transfer RNA	A-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.24	72	2026-05-20
6	7EQJ\|1\|B	Transfer RNA	RNA (76-MER)	Escherichia coli	Bacteria	RF00005	crystal structure of E. coli Valine tRNA	X-ray diffraction	2.043	75	2022-01-19
7	7EQJ\|1\|A	Transfer RNA	RNA (76-MER)	Escherichia coli	Bacteria	RF00005	crystal structure of E. coli Valine tRNA	X-ray diffraction	2.043	76	2022-01-19
8	9B51\|1\|AW	Transfer RNA	tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	74	2025-08-27
9	28UH\|1\|Y	Transfer RNA	A/P-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.06	72	2026-05-20
10	28UJ\|1\|Y	Transfer RNA	A/P-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.16	72	2026-05-20
11	9B4Z\|1\|AW	Transfer RNA	tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	74	2025-08-27
12	9TNL\|1\|Y	Transfer RNA	A/P-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with A/P- and P/E-site tRNA	Electron microscopy	2.11	72	2026-05-20
13	6OF1\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-ray diffraction	2.8	73	2019-04-17
14	6CAE\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	74	2018-04-18
15	5IBB\|1\|1K	Transfer RNA	mRNA, tRNAVal	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	72	2016-05-25
16	8URM\|1\|6	Transfer RNA	tRNA Val	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site	Electron microscopy	3	76	2025-07-09
17	9NL5\|1\|T	Transfer RNA	tRNA	Escherichia coli	Bacteria	RF00005	E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation	Electron microscopy	3	76	2025-04-02
18	6O97\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-ray diffraction	2.75	73	2019-04-17
19	6OF1\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-ray diffraction	2.8	73	2019-04-17
20	6OF1\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-ray diffraction	2.8	73	2019-04-17
21	6CAE\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	73	2018-04-18
22	9B4Z\|1\|AY	Transfer RNA	tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	74	2025-08-27
23	6O97\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-ray diffraction	2.75	73	2019-04-17
24	6CAE\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	73	2018-04-18
25	6CAE\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	73	2018-04-18
26	6ND6\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	74	2019-02-20
27	6OF1\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-ray diffraction	2.8	73	2019-04-17
28	5IBB\|1\|3L	Transfer RNA	tRNAVal	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	71	2016-05-25
29	6BY1\|1\|AW	Transfer RNA	Messenger RNA, Valine-specific transfer RNA	Escherichia coli	Bacteria	RF00005	E. coli pH03H9 complex	X-ray diffraction	3.94	76	2019-02-27
30	6ND6\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	73	2019-02-20
31	6O97\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-ray diffraction	2.75	73	2019-04-17
32	6BY1\|1\|BW	Transfer RNA	Messenger RNA, Valine-specific transfer RNA	Escherichia coli	Bacteria	RF00005	E. coli pH03H9 complex	X-ray diffraction	3.94	76	2019-02-27
33	6O97\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-ray diffraction	2.75	73	2019-04-17
34	6BY1\|1\|BV	Transfer RNA	Messenger RNA, Valine-specific transfer RNA	Escherichia coli	Bacteria	RF00005	E. coli pH03H9 complex	X-ray diffraction	3.94	76	2019-02-27
35	6BY1\|1\|AV	Transfer RNA	Messenger RNA, Valine-specific transfer RNA	Escherichia coli	Bacteria	RF00005	E. coli pH03H9 complex	X-ray diffraction	3.94	76	2019-02-27
36	6ND6\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	73	2019-02-20
37	7K00\|1\|Y	Transfer RNA	A-site tRNA-val, mRNA	Escherichia coli	Bacteria	RF00005	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	74	2020-09-23
38	9B51\|1\|AY	Transfer RNA	tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	74	2025-08-27
39	5IBB\|1\|3K	Transfer RNA	tRNAVal	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	70	2016-05-25
40	6ND6\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-ray diffraction	2.85	73	2019-02-20
41	6N1D\|1\|BPTN	Transfer RNA	P-tRNA	Escherichia coli	Bacteria	RF00005	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-ray diffraction	3.2	76	2019-04-03
42	9NJF\|1\|T	Transfer RNA	tRNA	Escherichia coli	Bacteria	RF00005	E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation	Electron microscopy	3.4	76	2025-04-02
43	28UL\|1\|Y	Transfer RNA	A/P-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.5	72	2026-05-20
44	6N1D\|1\|APTN	Transfer RNA	mRNA, P-tRNA	Escherichia coli	Bacteria	RF00005	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-ray diffraction	3.2	76	2019-04-03
45	28UN\|1\|Y	Transfer RNA	A/P-site Val-tRNA^Val, mRNA	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.48	72	2026-05-20
46	7B5K\|1\|9	Transfer RNA	E-site val tRNA (76-MER)	Escherichia coli K-12	Bacteria	RF00005	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	Electron microscopy	2.9	76	2021-05-26
47	6BY1\|1\|AY	Transfer RNA	Messenger RNA, Valine-specific transfer RNA	Escherichia coli	Bacteria	RF00005	E. coli pH03H9 complex	X-ray diffraction	3.94	76	2019-02-27
48	4V7A\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	Electron microscopy	9	76	2014-07-09
49	4V75\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	Electron microscopy	12	76	2014-07-09
50	4V6Z\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	Electron microscopy	12	76	2014-07-09
51	4V72\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	Electron microscopy	13	76	2014-07-09
52	4V6Y\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	Electron microscopy	12	76	2014-07-09
53	4V73\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	Electron microscopy	15	76	2014-07-09
54	4V79\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	Electron microscopy	15	76	2014-07-09
55	4V74\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	Electron microscopy	17	76	2014-07-09
56	4V77\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	Electron microscopy	17	76	2014-07-09
57	4V70\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	Electron microscopy	17	76	2014-07-09
58	4V76\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	Electron microscopy	17	76	2014-07-09
59	4V78\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	Electron microscopy	20	76	2014-07-09
60	4V71\|1\|A1	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', fMet-Val-tRNA-Val	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	Electron microscopy	20	76	2014-07-09
61	8PEG\|1\|Y	Transfer RNA	mRNA, tRNA-Val (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)	Electron microscopy	3.3	76	2024-03-06
62	8PVA\|1\|Y	Transfer RNA	A-site tRNA-val, mRNA	Escherichia coli	Bacteria	RF00005	Structure of bacterial ribosome determined by cryoEM at 100 keV	Electron microscopy	4.5	74	2023-11-29
63	8R3V\|1\|Y1	Transfer RNA	messenger RNA, tRNA-Val (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (non-rotated disome interface)	Electron microscopy	3.28	36	2024-03-06
64	8RCL\|1\|Y1	Transfer RNA	messenger RNA, tRNA-Val (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	Electron microscopy	3.49	36	2024-03-13
65	8RCM\|1\|Y1	Transfer RNA	messenger RNA, tRNA-Val (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	Electron microscopy	3.59	36	2024-03-06
66	8RCS\|1\|Y1	Transfer RNA	messenger RNA, tRNA-Val (A/P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Rotated disome interface class 1)	Electron microscopy	4.46	36	2024-03-06
67	8RCT\|1\|Y1	Transfer RNA	messenger RNA, tRNA-Val (A/P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Rotated disome interface class 2)	Electron microscopy	5.32	36	2024-03-06
68	2K4C\|1\|A	Transfer RNA	76-MER	Escherichia coli	Bacteria	RF00005	tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data	Solution NMR, solution scattering		76	2008-12-09

Release history

Release	4.40
Date	2026-05-20

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	4V74\|1\|A1	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	ELECTRON MICROSCOPY	17	76
2	4V72\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	ELECTRON MICROSCOPY	13	76
3	7EQJ\|1\|A	crystal structure of E. coli Valine tRNA	X-RAY DIFFRACTION	2.043	76
4	7EQJ\|1\|B	crystal structure of E. coli Valine tRNA	X-RAY DIFFRACTION	2.043	75
5	6ND6\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	74
6	6OF1\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	73
7	6CAE\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	74
8	6O97\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	73
9	6O97\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	73
10	6OF1\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	73
11	6CAE\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	73
12	6ND6\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	73
13	9B51\|1\|AY	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	74
14	9B4Z\|1\|AY	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	74
15	5IBB\|1\|3K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	70
16	5IBB\|1\|3L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	71
17	6N1D\|1\|BPTN	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	76
18	6N1D\|1\|APTN	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	76
19	7B5K\|1\|9	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	ELECTRON MICROSCOPY	2.9	76
20	6BY1\|1\|AY	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
21	4V78\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	ELECTRON MICROSCOPY	20	76
22	4V79\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	ELECTRON MICROSCOPY	15	76
23	4V75\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	ELECTRON MICROSCOPY	12	76
24	9NJF\|1\|T	E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation	ELECTRON MICROSCOPY	3.4	76
25	9NL5\|1\|T	E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation	ELECTRON MICROSCOPY	3	76
26	6BY1\|1\|BV	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
27	6BY1\|1\|BW	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
28	9B4Z\|1\|AW	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	74
29	6BY1\|1\|AV	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
30	28UJ\|1\|Y	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.16	72
31	28UH\|1\|Y	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.06	72
32	9TNL\|1\|Y	E. coli 70S ribosome with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.11	72
33	28UN\|1\|Y	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.48	72
34	28UL\|1\|Y	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.5	72
35	8URM\|1\|6	E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site	ELECTRON MICROSCOPY	3	76
36	28UK\|1\|Y	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.24	72
37	28UM\|1\|Y	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.15	72
38	9TQA\|1\|Y	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.06	72
39	28UI\|1\|Y	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.1	72
40	9TMI\|1\|Y	E. coli 70S ribosome with A- and P-site tRNA	ELECTRON MICROSCOPY	2.08	72
41	9B51\|1\|AW	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	74
42	8RCM\|1\|Y1	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	ELECTRON MICROSCOPY	3.59	36
43	8RCL\|1\|Y1	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	ELECTRON MICROSCOPY	3.49	36
44	8R3V\|1\|Y1	Escherichia coli paused disome complex (non-rotated disome interface)	ELECTRON MICROSCOPY	3.28	36
45	8PEG\|1\|Y	Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)	ELECTRON MICROSCOPY	3.3	76
46	8PVA\|1\|Y	Structure of bacterial ribosome determined by cryoEM at 100 keV	ELECTRON MICROSCOPY	4.5	74
47	7K00\|1\|Y	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	74
48	6OF1\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	73
49	6OF1\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	73
50	6O97\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	73
51	6ND6\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	73
52	6CAE\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	73
53	6CAE\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	73
54	6O97\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	73
55	6ND6\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	73
56	5IBB\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	72
57	4V70\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	ELECTRON MICROSCOPY	17	76
58	4V71\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	ELECTRON MICROSCOPY	20	76
59	8RCT\|1\|Y1	Escherichia coli paused disome complex (Rotated disome interface class 2)	ELECTRON MICROSCOPY	5.32	36
60	8RCS\|1\|Y1	Escherichia coli paused disome complex (Rotated disome interface class 1)	ELECTRON MICROSCOPY	4.46	36
61	4V73\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	ELECTRON MICROSCOPY	15	76
62	4V6Z\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	ELECTRON MICROSCOPY	12	76
63	4V6Y\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	ELECTRON MICROSCOPY	12	76
64	4V77\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	ELECTRON MICROSCOPY	17	76
65	4V76\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	ELECTRON MICROSCOPY	17	76
66	4V7A\|1\|A1	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	ELECTRON MICROSCOPY	9	76
67	6BY1\|1\|AW	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
68	2K4C\|1\|A	tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data	SOLUTION NMR, SOLUTION SCATTERING		76

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_69813.19 Current

Release history

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